| Motif | MYPOP.H13INVIVO.0.PSGB.A |
| Gene (human) | MYPOP (GeneCards) |
| Gene synonyms (human) | P42POP |
| Gene (mouse) | Mypop |
| Gene synonyms (mouse) | P42pop |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | MYPOP.H13INVIVO.0.PSGB.A |
| Gene (human) | MYPOP (GeneCards) |
| Gene synonyms (human) | P42POP |
| Gene (mouse) | Mypop |
| Gene synonyms (mouse) | P42pop |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 15 |
| Consensus | bSMGSRRSMGCWGvv |
| GC content | 72.49% |
| Information content (bits; total / per base) | 11.511 / 0.767 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + PBM |
| Aligned words | 999 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.821 | 0.824 | 0.648 | 0.653 | 0.575 | 0.582 | 24.673 | 27.018 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 0.885 | 0.834 | 0.839 | 0.786 | 0.773 | 0.729 |
| best | 0.927 | 0.889 | 0.888 | 0.842 | 0.826 | 0.784 | |
| Lysate, 2 experiments | median | 0.795 | 0.724 | 0.761 | 0.694 | 0.717 | 0.662 |
| best | 0.799 | 0.729 | 0.765 | 0.699 | 0.72 | 0.666 | |
| IVT, 2 experiments | median | 0.908 | 0.862 | 0.863 | 0.814 | 0.8 | 0.757 |
| best | 0.927 | 0.889 | 0.888 | 0.842 | 0.826 | 0.784 | |
| GFPIVT, 1 experiments | median | 0.885 | 0.834 | 0.841 | 0.786 | 0.784 | 0.736 |
| best | 0.885 | 0.834 | 0.841 | 0.786 | 0.784 | 0.736 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 5 experiments | median | 30.638 | 0.549 | 0.684 | 0.531 |
| best | 103.237 | 0.619 | 0.702 | 0.575 | |
| Lysate, 2 experiments | median | 30.638 | 0.547 | 0.684 | 0.529 |
| best | 73.495 | 0.562 | 0.702 | 0.575 | |
| IVT, 2 experiments | median | 71.38 | 0.613 | 0.698 | 0.544 |
| best | 103.237 | 0.619 | 0.699 | 0.544 | |
| GFPIVT, 1 experiments | median | 13.517 | 0.536 | 0.657 | 0.526 |
| best | 22.432 | 0.552 | 0.667 | 0.528 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.706 | 0.023 | 0.655 | 0.023 |
| best | 0.72 | 0.028 | 0.68 | 0.028 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Myb/SANT domain {3.5.1} (TFClass) |
| TF subfamily | Other Myb-like {3.5.1.0} (TFClass) |
| TFClass ID | TFClass: 3.5.1.0.5 |
| HGNC | HGNC:20178 |
| MGI | MGI:2446472 |
| EntrezGene (human) | GeneID:339344 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:232934 (SSTAR profile) |
| UniProt ID (human) | MYPOP_HUMAN |
| UniProt ID (mouse) | MYPOP_MOUSE |
| UniProt AC (human) | Q86VE0 (TFClass) |
| UniProt AC (mouse) | Q8R4U1 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 2 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 5 overall: 2 Lysate, 2 IVT, 1 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 4 |
| PCM | MYPOP.H13INVIVO.0.PSGB.A.pcm |
| PWM | MYPOP.H13INVIVO.0.PSGB.A.pwm |
| PFM | MYPOP.H13INVIVO.0.PSGB.A.pfm |
| Threshold to P-value map | MYPOP.H13INVIVO.0.PSGB.A.thr |
| Motif in other formats | |
| JASPAR format | MYPOP.H13INVIVO.0.PSGB.A_jaspar_format.txt |
| MEME format | MYPOP.H13INVIVO.0.PSGB.A_meme_format.meme |
| Transfac format | MYPOP.H13INVIVO.0.PSGB.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 127.0 | 197.0 | 495.0 | 180.0 |
| 02 | 58.0 | 179.0 | 742.0 | 20.0 |
| 03 | 395.0 | 521.0 | 23.0 | 60.0 |
| 04 | 51.0 | 3.0 | 937.0 | 8.0 |
| 05 | 89.0 | 755.0 | 141.0 | 14.0 |
| 06 | 631.0 | 59.0 | 189.0 | 120.0 |
| 07 | 167.0 | 27.0 | 705.0 | 100.0 |
| 08 | 48.0 | 153.0 | 764.0 | 34.0 |
| 09 | 243.0 | 631.0 | 51.0 | 74.0 |
| 10 | 26.0 | 26.0 | 892.0 | 55.0 |
| 11 | 37.0 | 814.0 | 127.0 | 21.0 |
| 12 | 612.0 | 87.0 | 137.0 | 163.0 |
| 13 | 102.0 | 36.0 | 838.0 | 23.0 |
| 14 | 287.0 | 444.0 | 180.0 | 88.0 |
| 15 | 214.0 | 196.0 | 514.0 | 75.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.127 | 0.197 | 0.495 | 0.18 |
| 02 | 0.058 | 0.179 | 0.743 | 0.02 |
| 03 | 0.395 | 0.522 | 0.023 | 0.06 |
| 04 | 0.051 | 0.003 | 0.938 | 0.008 |
| 05 | 0.089 | 0.756 | 0.141 | 0.014 |
| 06 | 0.632 | 0.059 | 0.189 | 0.12 |
| 07 | 0.167 | 0.027 | 0.706 | 0.1 |
| 08 | 0.048 | 0.153 | 0.765 | 0.034 |
| 09 | 0.243 | 0.632 | 0.051 | 0.074 |
| 10 | 0.026 | 0.026 | 0.893 | 0.055 |
| 11 | 0.037 | 0.815 | 0.127 | 0.021 |
| 12 | 0.613 | 0.087 | 0.137 | 0.163 |
| 13 | 0.102 | 0.036 | 0.839 | 0.023 |
| 14 | 0.287 | 0.444 | 0.18 | 0.088 |
| 15 | 0.214 | 0.196 | 0.515 | 0.075 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.67 | -0.235 | 0.681 | -0.325 |
| 02 | -1.438 | -0.33 | 1.084 | -2.449 |
| 03 | 0.456 | 0.732 | -2.319 | -1.405 |
| 04 | -1.562 | -3.974 | 1.317 | -3.252 |
| 05 | -1.019 | 1.102 | -0.566 | -2.772 |
| 06 | 0.923 | -1.421 | -0.277 | -0.726 |
| 07 | -0.399 | -2.17 | 1.033 | -0.905 |
| 08 | -1.621 | -0.486 | 1.113 | -1.951 |
| 09 | -0.027 | 0.923 | -1.562 | -1.2 |
| 10 | -2.205 | -2.205 | 1.268 | -1.489 |
| 11 | -1.871 | 1.177 | -0.67 | -2.404 |
| 12 | 0.892 | -1.042 | -0.595 | -0.423 |
| 13 | -0.886 | -1.897 | 1.206 | -2.319 |
| 14 | 0.138 | 0.572 | -0.325 | -1.031 |
| 15 | -0.153 | -0.24 | 0.718 | -1.187 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.37571 |
| 0.0005 | 5.25531 |
| 0.0001 | 7.09566 |