MYRFL.H13INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MYRFL.H13INVIVO.0.P.C
Gene (human)	MYRFL (GeneCards)
Gene synonyms (human)
Gene (mouse)	Myrfl
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	18
Consensus	dRGKhbACCAGvdGbYbv
GC content	60.26%
Information content (bits; total / per base)	14.351 / 0.797
Data sources	ChIP-Seq
Aligned words	999
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.965	0.965	0.943	0.943	0.895	0.895	177.678	177.678

TF superclass	Immunoglobulin fold {6} (TFClass)
TF class	NDT80 domain factors {6.6} (TFClass)
TF family	MYRF-related {6.6.1} (TFClass)
TF subfamily	{6.6.1.0} (TFClass)
TFClass ID	TFClass: 6.6.1.0.255
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	MRFL_HUMAN
UniProt ID (mouse)	MRFL_MOUSE
UniProt AC (human)	Q96LU7 (TFClass)
UniProt AC (mouse)	Q3UN70 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	MYRFL.H13INVIVO.0.P.C.pcm
PWM	MYRFL.H13INVIVO.0.P.C.pwm
PFM	MYRFL.H13INVIVO.0.P.C.pfm
Threshold to P-value map	MYRFL.H13INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	MYRFL.H13INVIVO.0.P.C_jaspar_format.txt
MEME format	MYRFL.H13INVIVO.0.P.C_meme_format.meme
Transfac format	MYRFL.H13INVIVO.0.P.C_transfac_format.txt
Homer format	MYRFL.H13INVIVO.0.P.C_homer_format_0.001.txt MYRFL.H13INVIVO.0.P.C_homer_format_0.0005.txt MYRFL.H13INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	375.0	130.0	283.0	211.0
02	167.0	35.0	718.0	79.0
03	66.0	45.0	877.0	11.0
04	50.0	74.0	388.0	487.0
05	293.0	363.0	101.0	242.0
06	106.0	115.0	525.0	253.0
07	941.0	48.0	5.0	5.0
08	9.0	965.0	9.0	16.0
09	25.0	936.0	24.0	14.0
10	973.0	4.0	3.0	19.0
11	3.0	1.0	982.0	13.0
12	359.0	350.0	188.0	102.0
13	484.0	66.0	102.0	347.0
14	86.0	70.0	820.0	23.0
15	95.0	476.0	218.0	210.0
16	146.0	561.0	29.0	263.0
17	58.0	435.0	175.0	331.0
18	150.0	420.0	295.0	134.0

PFM

	A	C	G	T
01	0.375	0.13	0.283	0.211
02	0.167	0.035	0.719	0.079
03	0.066	0.045	0.878	0.011
04	0.05	0.074	0.388	0.487
05	0.293	0.363	0.101	0.242
06	0.106	0.115	0.526	0.253
07	0.942	0.048	0.005	0.005
08	0.009	0.966	0.009	0.016
09	0.025	0.937	0.024	0.014
10	0.974	0.004	0.003	0.019
11	0.003	0.001	0.983	0.013
12	0.359	0.35	0.188	0.102
13	0.484	0.066	0.102	0.347
14	0.086	0.07	0.821	0.023
15	0.095	0.476	0.218	0.21
16	0.146	0.562	0.029	0.263
17	0.058	0.435	0.175	0.331
18	0.15	0.42	0.295	0.134

PWM

	A	C	G	T
01	0.404	-0.647	0.124	-0.167
02	-0.399	-1.924	1.052	-1.136
03	-1.312	-1.683	1.251	-2.984
04	-1.581	-1.2	0.438	0.664
05	0.159	0.372	-0.895	-0.031
06	-0.848	-0.768	0.739	0.013
07	1.321	-1.621	-3.621	-3.621
08	-3.155	1.347	-3.155	-2.652
09	-2.242	1.316	-2.28	-2.772
10	1.355	-3.782	-3.974	-2.496
11	-3.974	-4.524	1.364	-2.838
12	0.361	0.336	-0.282	-0.886
13	0.658	-1.312	-0.886	0.327
14	-1.053	-1.254	1.184	-2.319
15	-0.955	0.642	-0.135	-0.172
16	-0.532	0.805	-2.102	0.051
17	-1.438	0.552	-0.353	0.28
18	-0.505	0.517	0.165	-0.617

Standard thresholds

P-value	Threshold
0.001	3.28121
0.0005	4.40346
0.0001	6.74271