MYSM1.H13RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MYSM1.H13RSNP.0.P.D
Gene (human)	MYSM1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Mysm1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	hATCSdbbbSCATCSbb
GC content	58.1%
Information content (bits; total / per base)	15.755 / 0.927
Data sources	ChIP-Seq
Aligned words	65
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.855	0.882	0.79	0.858	0.864	0.9	4.244	7.301

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Myb/SANT domain {3.5.1} (TFClass)
TF subfamily	Other Myb-like {3.5.1.0} (TFClass)
TFClass ID	TFClass: 3.5.1.0.255
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	MYSM1_HUMAN
UniProt ID (mouse)	MYSM1_MOUSE
UniProt AC (human)	Q5VVJ2 (TFClass)
UniProt AC (mouse)	Q69Z66 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	MYSM1.H13RSNP.0.P.D.pcm
PWM	MYSM1.H13RSNP.0.P.D.pwm
PFM	MYSM1.H13RSNP.0.P.D.pfm
Threshold to P-value map	MYSM1.H13RSNP.0.P.D.thr
Motif in other formats
JASPAR format	MYSM1.H13RSNP.0.P.D_jaspar_format.txt
MEME format	MYSM1.H13RSNP.0.P.D_meme_format.meme
Transfac format	MYSM1.H13RSNP.0.P.D_transfac_format.txt
Homer format	MYSM1.H13RSNP.0.P.D_homer_format_0.001.txt MYSM1.H13RSNP.0.P.D_homer_format_0.0005.txt MYSM1.H13RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	31.0	21.0	4.0	9.0
02	59.0	4.0	0.0	2.0
03	1.0	1.0	2.0	61.0
04	0.0	62.0	0.0	3.0
05	4.0	47.0	8.0	6.0
06	17.0	6.0	31.0	11.0
07	8.0	30.0	14.0	13.0
08	5.0	31.0	11.0	18.0
09	4.0	15.0	33.0	13.0
10	3.0	46.0	10.0	6.0
11	6.0	58.0	1.0	0.0
12	61.0	0.0	0.0	4.0
13	0.0	0.0	0.0	65.0
14	0.0	64.0	0.0	1.0
15	0.0	48.0	9.0	8.0
16	9.0	12.0	25.0	19.0
17	6.0	31.0	18.0	10.0

PFM

	A	C	G	T
01	0.477	0.323	0.062	0.138
02	0.908	0.062	0.0	0.031
03	0.015	0.015	0.031	0.938
04	0.0	0.954	0.0	0.046
05	0.062	0.723	0.123	0.092
06	0.262	0.092	0.477	0.169
07	0.123	0.462	0.215	0.2
08	0.077	0.477	0.169	0.277
09	0.062	0.231	0.508	0.2
10	0.046	0.708	0.154	0.092
11	0.092	0.892	0.015	0.0
12	0.938	0.0	0.0	0.062
13	0.0	0.0	0.0	1.0
14	0.0	0.985	0.0	0.015
15	0.0	0.738	0.138	0.123
16	0.138	0.185	0.385	0.292
17	0.092	0.477	0.277	0.154

PWM

	A	C	G	T
01	0.617	0.243	-1.232	-0.543
02	1.245	-1.232	-2.808	-1.737
03	-2.136	-2.136	-1.737	1.278
04	-2.808	1.293	-2.808	-1.453
05	-1.232	1.022	-0.648	-0.898
06	0.042	-0.898	0.617	-0.362
07	-0.648	0.585	-0.139	-0.208
08	-1.051	0.617	-0.362	0.096
09	-1.232	-0.075	0.677	-0.208
10	-1.453	1.001	-0.448	-0.898
11	-0.898	1.228	-2.136	-2.808
12	1.278	-2.808	-2.808	-1.232
13	-2.808	-2.808	-2.808	1.34
14	-2.808	1.325	-2.808	-2.136
15	-2.808	1.042	-0.543	-0.648
16	-0.543	-0.282	0.409	0.148
17	-0.898	0.617	0.096	-0.448

Standard thresholds

P-value	Threshold
0.001	3.70476
0.0005	4.72121
0.0001	6.85836