| Motif | MYT1.H13INVIVO.0.SG.D |
| Gene (human) | MYT1 (GeneCards) |
| Gene synonyms (human) | KIAA0835, KIAA1050, MTF1, MYTI, PLPB1 |
| Gene (mouse) | Myt1 |
| Gene synonyms (mouse) | Kiaa0835, Nzf2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MYT1.H13INVIVO.0.SG.D |
| Gene (human) | MYT1 (GeneCards) |
| Gene synonyms (human) | KIAA0835, KIAA1050, MTF1, MYTI, PLPB1 |
| Gene (mouse) | Myt1 |
| Gene synonyms (mouse) | Kiaa0835, Nzf2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 18 |
| Consensus | ddbdWAACTTTbnnvvMh |
| GC content | 31.79% |
| Information content (bits; total / per base) | 14.105 / 0.784 |
| Data sources | HT-SELEX + Genomic HT-SELEX |
| Aligned words | 8736 |
| Previous names |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 6 experiments | median | 0.988 | 0.98 | 0.98 | 0.97 | 0.966 | 0.951 |
| best | 0.996 | 0.994 | 0.993 | 0.989 | 0.986 | 0.98 | |
| Lysate, 2 experiments | median | 0.988 | 0.982 | 0.97 | 0.96 | 0.91 | 0.904 |
| best | 0.996 | 0.993 | 0.991 | 0.986 | 0.979 | 0.971 | |
| IVT, 2 experiments | median | 0.956 | 0.934 | 0.904 | 0.882 | 0.817 | 0.813 |
| best | 0.988 | 0.981 | 0.975 | 0.963 | 0.952 | 0.933 | |
| GFPIVT, 2 experiments | median | 0.992 | 0.987 | 0.99 | 0.982 | 0.984 | 0.974 |
| best | 0.996 | 0.994 | 0.993 | 0.989 | 0.986 | 0.98 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 6 experiments | median | 391.658 | 0.762 | 0.872 | 0.771 |
| best | 578.066 | 0.859 | 0.955 | 0.899 | |
| Lysate, 2 experiments | median | 490.266 | 0.859 | 0.952 | 0.892 |
| best | 525.076 | 0.859 | 0.955 | 0.899 | |
| IVT, 2 experiments | median | 283.471 | 0.667 | 0.767 | 0.656 |
| best | 391.658 | 0.762 | 0.872 | 0.771 | |
| GFPIVT, 2 experiments | median | 124.114 | 0.747 | 0.795 | 0.659 |
| best | 578.066 | 0.852 | 0.935 | 0.863 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2HC zinc finger factors {2.7} (TFClass) |
| TF family | MYT {2.7.1} (TFClass) |
| TF subfamily | {2.7.1.0} (TFClass) |
| TFClass ID | TFClass: 2.7.1.0.1 |
| HGNC | HGNC:7622 |
| MGI | MGI:1100535 |
| EntrezGene (human) | GeneID:4661 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17932 (SSTAR profile) |
| UniProt ID (human) | MYT1_HUMAN |
| UniProt ID (mouse) | MYT1_MOUSE |
| UniProt AC (human) | Q01538 (TFClass) |
| UniProt AC (mouse) | Q8CFC2 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 6 overall: 2 Lysate, 2 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 6 overall: 2 Lysate, 2 IVT, 2 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | MYT1.H13INVIVO.0.SG.D.pcm |
| PWM | MYT1.H13INVIVO.0.SG.D.pwm |
| PFM | MYT1.H13INVIVO.0.SG.D.pfm |
| Threshold to P-value map | MYT1.H13INVIVO.0.SG.D.thr |
| Motif in other formats | |
| JASPAR format | MYT1.H13INVIVO.0.SG.D_jaspar_format.txt |
| MEME format | MYT1.H13INVIVO.0.SG.D_meme_format.meme |
| Transfac format | MYT1.H13INVIVO.0.SG.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4534.25 | 755.25 | 1270.25 | 2176.25 |
| 02 | 3311.5 | 915.5 | 2932.5 | 1576.5 |
| 03 | 722.0 | 1206.0 | 4208.0 | 2600.0 |
| 04 | 1618.0 | 1364.0 | 1393.0 | 4361.0 |
| 05 | 4576.0 | 515.0 | 638.0 | 3007.0 |
| 06 | 8587.0 | 26.0 | 0.0 | 123.0 |
| 07 | 8735.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.0 | 8549.0 | 187.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 8736.0 |
| 10 | 1.0 | 0.0 | 0.0 | 8735.0 |
| 11 | 249.0 | 395.0 | 7.0 | 8085.0 |
| 12 | 1166.0 | 1732.0 | 1974.0 | 3864.0 |
| 13 | 1102.0 | 2710.0 | 2071.0 | 2853.0 |
| 14 | 1912.0 | 2459.0 | 2609.0 | 1756.0 |
| 15 | 3520.0 | 2110.0 | 1789.0 | 1317.0 |
| 16 | 5008.0 | 1627.0 | 1074.0 | 1027.0 |
| 17 | 5493.75 | 1684.75 | 831.75 | 725.75 |
| 18 | 4487.75 | 1913.75 | 1039.75 | 1294.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.519 | 0.086 | 0.145 | 0.249 |
| 02 | 0.379 | 0.105 | 0.336 | 0.18 |
| 03 | 0.083 | 0.138 | 0.482 | 0.298 |
| 04 | 0.185 | 0.156 | 0.159 | 0.499 |
| 05 | 0.524 | 0.059 | 0.073 | 0.344 |
| 06 | 0.983 | 0.003 | 0.0 | 0.014 |
| 07 | 1.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.979 | 0.021 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 1.0 |
| 10 | 0.0 | 0.0 | 0.0 | 1.0 |
| 11 | 0.029 | 0.045 | 0.001 | 0.925 |
| 12 | 0.133 | 0.198 | 0.226 | 0.442 |
| 13 | 0.126 | 0.31 | 0.237 | 0.327 |
| 14 | 0.219 | 0.281 | 0.299 | 0.201 |
| 15 | 0.403 | 0.242 | 0.205 | 0.151 |
| 16 | 0.573 | 0.186 | 0.123 | 0.118 |
| 17 | 0.629 | 0.193 | 0.095 | 0.083 |
| 18 | 0.514 | 0.219 | 0.119 | 0.148 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.73 | -1.06 | -0.541 | -0.004 |
| 02 | 0.416 | -0.868 | 0.294 | -0.326 |
| 03 | -1.105 | -0.593 | 0.655 | 0.174 |
| 04 | -0.3 | -0.47 | -0.449 | 0.691 |
| 05 | 0.739 | -1.441 | -1.228 | 0.32 |
| 06 | 1.368 | -4.348 | -6.871 | -2.859 |
| 07 | 1.385 | -6.871 | -6.871 | -6.506 |
| 08 | -6.871 | 1.364 | -2.447 | -6.871 |
| 09 | -6.871 | -6.871 | -6.871 | 1.386 |
| 10 | -6.506 | -6.871 | -6.871 | 1.385 |
| 11 | -2.163 | -1.705 | -5.463 | 1.308 |
| 12 | -0.627 | -0.232 | -0.101 | 0.57 |
| 13 | -0.683 | 0.216 | -0.053 | 0.267 |
| 14 | -0.133 | 0.118 | 0.178 | -0.218 |
| 15 | 0.477 | -0.034 | -0.199 | -0.505 |
| 16 | 0.829 | -0.294 | -0.709 | -0.753 |
| 17 | 0.922 | -0.259 | -0.964 | -1.1 |
| 18 | 0.72 | -0.132 | -0.741 | -0.522 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.11101 |
| 0.0005 | 3.80466 |
| 0.0001 | 6.94836 |