Motif | OLIG2.H13RSNP.1.P.B |
Gene (human) | OLIG2 (GeneCards) |
Gene synonyms (human) | BHLHB1, BHLHE19, PRKCBP2, RACK17 |
Gene (mouse) | Olig2 |
Gene synonyms (mouse) | |
LOGO | ![]() |
LOGO (reverse complement) | ![]() |
Motif subtype | 1 |
Quality | B |
Motif | OLIG2.H13RSNP.1.P.B |
Gene (human) | OLIG2 (GeneCards) |
Gene synonyms (human) | BHLHB1, BHLHE19, PRKCBP2, RACK17 |
Gene (mouse) | Olig2 |
Gene synonyms (mouse) | |
LOGO | ![]() |
LOGO (reverse complement) | ![]() |
Motif subtype | 1 |
Quality | B |
Motif length | 9 |
Consensus | MCAGCTGYY |
GC content | 55.83% |
Information content (bits; total / per base) | 11.177 / 1.242 |
Data sources | ChIP-Seq |
Aligned words | 999 |
Previous names | OLIG2.H12RSNP.1.P.B |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 8 (40) | 0.721 | 0.797 | 0.599 | 0.668 | 0.637 | 0.722 | 1.691 | 1.984 | 48.181 | 110.0 |
Mouse | 9 (60) | 0.84 | 0.887 | 0.704 | 0.774 | 0.777 | 0.846 | 2.136 | 2.492 | 123.829 | 220.31 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 8 experiments | median | 0.847 | 0.783 | 0.746 | 0.706 | 0.656 | 0.641 |
best | 0.948 | 0.889 | 0.941 | 0.895 | 0.845 | 0.819 | |
Methyl HT-SELEX, 2 experiments | median | 0.937 | 0.878 | 0.917 | 0.867 | 0.831 | 0.798 |
best | 0.948 | 0.889 | 0.941 | 0.895 | 0.845 | 0.819 | |
Non-Methyl HT-SELEX, 6 experiments | median | 0.753 | 0.693 | 0.681 | 0.642 | 0.604 | 0.601 |
best | 0.926 | 0.858 | 0.9 | 0.844 | 0.811 | 0.774 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 2.102 | 1.097 | 0.357 | 0.176 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.879 | 0.253 | 0.903 | 0.631 |
batch 2 | 0.631 | 0.378 | 0.639 | 0.452 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
TF family | Tal-related {1.2.3} (TFClass) |
TF subfamily | Neurogenin-ATO {1.2.3.4} (TFClass) |
TFClass ID | TFClass: 1.2.3.4.14 |
HGNC | HGNC:9398 |
MGI | MGI:1355331 |
EntrezGene (human) | GeneID:10215 (SSTAR profile) |
EntrezGene (mouse) | GeneID:50913 (SSTAR profile) |
UniProt ID (human) | OLIG2_HUMAN |
UniProt ID (mouse) | OLIG2_MOUSE |
UniProt AC (human) | Q13516 (TFClass) |
UniProt AC (mouse) | Q9EQW6 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 8 human, 9 mouse |
HT-SELEX | 6 |
Methyl-HT-SELEX | 2 |
Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
SMiLE-Seq | 0 |
PBM | 0 |
PCM | OLIG2.H13RSNP.1.P.B.pcm |
PWM | OLIG2.H13RSNP.1.P.B.pwm |
PFM | OLIG2.H13RSNP.1.P.B.pfm |
Threshold to P-value map | OLIG2.H13RSNP.1.P.B.thr |
Motif in other formats | |
JASPAR format | OLIG2.H13RSNP.1.P.B_jaspar_format.txt |
MEME format | OLIG2.H13RSNP.1.P.B_meme_format.meme |
Transfac format | OLIG2.H13RSNP.1.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 246.0 | 685.0 | 47.0 | 21.0 |
02 | 114.0 | 883.0 | 1.0 | 1.0 |
03 | 948.0 | 0.0 | 9.0 | 42.0 |
04 | 4.0 | 6.0 | 660.0 | 329.0 |
05 | 165.0 | 821.0 | 10.0 | 3.0 |
06 | 10.0 | 2.0 | 2.0 | 985.0 |
07 | 0.0 | 2.0 | 985.0 | 12.0 |
08 | 1.0 | 431.0 | 204.0 | 363.0 |
09 | 31.0 | 207.0 | 65.0 | 696.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.246 | 0.686 | 0.047 | 0.021 |
02 | 0.114 | 0.884 | 0.001 | 0.001 |
03 | 0.949 | 0.0 | 0.009 | 0.042 |
04 | 0.004 | 0.006 | 0.661 | 0.329 |
05 | 0.165 | 0.822 | 0.01 | 0.003 |
06 | 0.01 | 0.002 | 0.002 | 0.986 |
07 | 0.0 | 0.002 | 0.986 | 0.012 |
08 | 0.001 | 0.431 | 0.204 | 0.363 |
09 | 0.031 | 0.207 | 0.065 | 0.697 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.015 | 1.005 | -1.641 | -2.404 |
02 | -0.776 | 1.258 | -4.524 | -4.524 |
03 | 1.329 | -4.981 | -3.155 | -1.749 |
04 | -3.782 | -3.483 | 0.968 | 0.274 |
05 | -0.411 | 1.185 | -3.065 | -3.974 |
06 | -3.065 | -4.212 | -4.212 | 1.367 |
07 | -4.981 | -4.212 | 1.367 | -2.908 |
08 | -4.524 | 0.543 | -0.201 | 0.372 |
09 | -2.039 | -0.186 | -1.327 | 1.02 |
P-value | Threshold |
---|---|
0.001 | 4.30778 |
0.0005 | 5.39717 |
0.0001 | 7.55547 |