MotifOVOL2.H13RSNP.0.PSM.A
Gene (human)OVOL2
(GeneCards)
Gene synonyms (human)ZNF339
Gene (mouse)Ovol2
Gene synonyms (mouse)Ovo2, Zfp339, Znf339
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length14
ConsensusndnRTAACGGThhn
GC content41.85%
Information content (bits; total / per base)15.079 / 1.077
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words6885
Previous namesOVOL2.H12RSNP.0.PSM.A

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.836 0.86 0.821 0.845 0.885 0.912 3.589 3.885 409.523 433.0

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.997 0.995 0.996 0.993 0.987 0.983
best 0.999 0.998 0.998 0.997 0.997 0.996
Methyl HT-SELEX, 2 experiments median 0.997 0.994 0.994 0.99 0.958 0.954
best 0.998 0.997 0.997 0.995 0.986 0.982
Non-Methyl HT-SELEX, 2 experiments median 0.998 0.996 0.997 0.994 0.993 0.989
best 0.999 0.998 0.998 0.997 0.997 0.996

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.721 0.439 0.871 0.684
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyOVOL {2.3.3.17} (TFClass)
TFClass IDTFClass: 2.3.3.17.2
HGNCHGNC:15804
MGIMGI:1338039
EntrezGene (human)GeneID:58495
(SSTAR profile)
EntrezGene (mouse)GeneID:107586
(SSTAR profile)
UniProt ID (human)OVOL2_HUMAN
UniProt ID (mouse)OVOL2_MOUSE
UniProt AC (human)Q9BRP0
(TFClass)
UniProt AC (mouse)Q8CIV7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
Genomic HT-SELEX 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq 0
PBM 0
PCM
ACGT
011593.751780.751870.751639.75
023314.0494.02049.01028.0
031587.01895.01681.01722.0
044774.0954.01043.0114.0
050.00.00.06885.0
066885.00.00.00.0
076885.00.00.00.0
080.06885.00.00.0
090.00.06885.00.0
100.00.06885.00.0
11633.00.019.06233.0
122615.01521.0282.02467.0
131589.252428.25304.252563.25
141632.51794.51567.51890.5
PFM
ACGT
010.2310.2590.2720.238
020.4810.0720.2980.149
030.2310.2750.2440.25
040.6930.1390.1510.017
050.00.00.01.0
061.00.00.00.0
071.00.00.00.0
080.01.00.00.0
090.00.01.00.0
100.00.01.00.0
110.0920.00.0030.905
120.380.2210.0410.358
130.2310.3530.0440.372
140.2370.2610.2280.275
PWM
ACGT
01-0.0770.0340.083-0.048
020.654-1.2450.174-0.515
03-0.0810.096-0.0240.0
041.019-0.589-0.5-2.697
05-6.659-6.659-6.6591.385
061.385-6.659-6.659-6.659
071.385-6.659-6.659-6.659
08-6.6591.385-6.659-6.659
09-6.659-6.6591.385-6.659
10-6.659-6.6591.385-6.659
11-0.998-6.659-4.3981.286
120.418-0.124-1.8020.36
13-0.080.344-1.7270.398
14-0.0530.042-0.0930.094
Standard thresholds
P-value Threshold
0.001 -0.16193
0.0005 1.441225
0.0001 5.189915