| Motif | PHF21A.H13INVITRO.0.B.B |
| Gene (human) | PHF21A (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Phf21a |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | PHF21A.H13INVITRO.0.B.B |
| Gene (human) | PHF21A (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Phf21a |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | nvSMRRWWYAn |
| GC content | 39.13% |
| Information content (bits; total / per base) | 6.462 / 0.587 |
| Data sources | PBM |
| Aligned words | 579 |
| Previous names |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.541 | 0.002 | 0.689 | 0.016 |
| best | 0.571 | 0.003 | 0.733 | 0.024 | |
| TF superclass | beta-Sheet binding to DNA {8} (TFClass) |
| TF class | A.T hook factors {8.2} (TFClass) |
| TF family | Unannotated {8.2.255} (TFClass) |
| TF subfamily | {8.2.255.0} (TFClass) |
| TFClass ID | TFClass: 8.2.255.0.4 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | PF21A_HUMAN |
| UniProt ID (mouse) | PF21A_MOUSE |
| UniProt AC (human) | Q96BD5 (TFClass) |
| UniProt AC (mouse) | Q6ZPK0 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 4 |
| PCM | PHF21A.H13INVITRO.0.B.B.pcm |
| PWM | PHF21A.H13INVITRO.0.B.B.pwm |
| PFM | PHF21A.H13INVITRO.0.B.B.pfm |
| Threshold to P-value map | PHF21A.H13INVITRO.0.B.B.thr |
| Motif in other formats | |
| JASPAR format | PHF21A.H13INVITRO.0.B.B_jaspar_format.txt |
| MEME format | PHF21A.H13INVITRO.0.B.B_meme_format.meme |
| Transfac format | PHF21A.H13INVITRO.0.B.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 185.0 | 128.0 | 127.0 | 139.0 |
| 02 | 210.0 | 171.0 | 197.0 | 1.0 |
| 03 | 0.0 | 284.0 | 175.0 | 120.0 |
| 04 | 253.0 | 195.0 | 131.0 | 0.0 |
| 05 | 318.0 | 102.0 | 159.0 | 0.0 |
| 06 | 370.0 | 1.0 | 110.0 | 98.0 |
| 07 | 313.0 | 6.0 | 69.0 | 191.0 |
| 08 | 416.0 | 21.0 | 53.0 | 89.0 |
| 09 | 106.0 | 253.0 | 0.0 | 220.0 |
| 10 | 579.0 | 0.0 | 0.0 | 0.0 |
| 11 | 145.0 | 164.0 | 146.0 | 124.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.32 | 0.221 | 0.219 | 0.24 |
| 02 | 0.363 | 0.295 | 0.34 | 0.002 |
| 03 | 0.0 | 0.491 | 0.302 | 0.207 |
| 04 | 0.437 | 0.337 | 0.226 | 0.0 |
| 05 | 0.549 | 0.176 | 0.275 | 0.0 |
| 06 | 0.639 | 0.002 | 0.19 | 0.169 |
| 07 | 0.541 | 0.01 | 0.119 | 0.33 |
| 08 | 0.718 | 0.036 | 0.092 | 0.154 |
| 09 | 0.183 | 0.437 | 0.0 | 0.38 |
| 10 | 1.0 | 0.0 | 0.0 | 0.0 |
| 11 | 0.25 | 0.283 | 0.252 | 0.214 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.243 | -0.122 | -0.129 | -0.04 |
| 02 | 0.369 | 0.165 | 0.305 | -4.034 |
| 03 | -4.522 | 0.669 | 0.188 | -0.185 |
| 04 | 0.554 | 0.295 | -0.099 | -4.522 |
| 05 | 0.781 | -0.345 | 0.093 | -4.522 |
| 06 | 0.932 | -4.034 | -0.271 | -0.385 |
| 07 | 0.765 | -2.959 | -0.729 | 0.275 |
| 08 | 1.049 | -1.868 | -0.986 | -0.48 |
| 09 | -0.308 | 0.554 | -4.522 | 0.415 |
| 10 | 1.378 | -4.522 | -4.522 | -4.522 |
| 11 | 0.002 | 0.124 | 0.009 | -0.153 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.17341 |
| 0.0005 | 5.586975 |
| 0.0001 | 6.31519 |