| Motif | POGK.H13RSNP.0.SI.D |
| Gene (human) | POGK (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Pogk |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | POGK.H13RSNP.0.SI.D |
| Gene (human) | POGK (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Pogk |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 26 |
| Consensus | vvhhhdndTCGAChWdARGTCGAChh |
| GC content | 49.42% |
| Information content (bits; total / per base) | 21.664 / 0.833 |
| Data sources | HT-SELEX + SMiLe-Seq |
| Aligned words | 334 |
| Previous names |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 2 experiments | median | 0.989 | 0.986 | 0.902 | 0.904 | 0.742 | 0.769 |
| best | 0.996 | 0.994 | 0.976 | 0.971 | 0.816 | 0.835 | |
| Lysate, 1 experiments | median | 0.996 | 0.994 | 0.976 | 0.971 | 0.816 | 0.835 |
| best | 0.996 | 0.994 | 0.976 | 0.971 | 0.816 | 0.835 | |
| IVT, 1 experiments | median | 0.982 | 0.978 | 0.827 | 0.836 | 0.667 | 0.703 |
| best | 0.982 | 0.978 | 0.827 | 0.836 | 0.667 | 0.703 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.577 | 0.582 | 0.522 | 0.537 | 0.506 | 0.519 |
| best | 0.577 | 0.582 | 0.522 | 0.537 | 0.506 | 0.519 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Other {3.0} (TFClass) |
| TF family | Brinker {3.0.255} (TFClass) |
| TF subfamily | {3.0.255.0} (TFClass) |
| TFClass ID | TFClass: 3.0.255.0.1 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | POGK_HUMAN |
| UniProt ID (mouse) | POGK_MOUSE |
| UniProt AC (human) | Q9P215 (TFClass) |
| UniProt AC (mouse) | Q80TC5 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 overall: 1 Lysate, 1 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 0 |
| PCM | POGK.H13RSNP.0.SI.D.pcm |
| PWM | POGK.H13RSNP.0.SI.D.pwm |
| PFM | POGK.H13RSNP.0.SI.D.pfm |
| Threshold to P-value map | POGK.H13RSNP.0.SI.D.thr |
| Motif in other formats | |
| JASPAR format | POGK.H13RSNP.0.SI.D_jaspar_format.txt |
| MEME format | POGK.H13RSNP.0.SI.D_meme_format.meme |
| Transfac format | POGK.H13RSNP.0.SI.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 118.5 | 104.5 | 76.5 | 34.5 |
| 02 | 118.5 | 129.5 | 53.5 | 32.5 |
| 03 | 105.0 | 131.0 | 16.0 | 82.0 |
| 04 | 86.0 | 122.0 | 30.0 | 96.0 |
| 05 | 126.0 | 63.0 | 50.0 | 95.0 |
| 06 | 155.0 | 43.0 | 55.0 | 81.0 |
| 07 | 97.0 | 60.0 | 121.0 | 56.0 |
| 08 | 38.0 | 30.0 | 161.0 | 105.0 |
| 09 | 4.0 | 72.0 | 3.0 | 255.0 |
| 10 | 0.0 | 267.0 | 63.0 | 4.0 |
| 11 | 63.0 | 5.0 | 266.0 | 0.0 |
| 12 | 270.0 | 52.0 | 7.0 | 5.0 |
| 13 | 24.0 | 304.0 | 3.0 | 3.0 |
| 14 | 75.0 | 139.0 | 4.0 | 116.0 |
| 15 | 76.0 | 28.0 | 11.0 | 219.0 |
| 16 | 76.0 | 37.0 | 40.0 | 181.0 |
| 17 | 269.0 | 4.0 | 5.0 | 56.0 |
| 18 | 130.0 | 12.0 | 158.0 | 34.0 |
| 19 | 6.0 | 0.0 | 324.0 | 4.0 |
| 20 | 0.0 | 0.0 | 0.0 | 334.0 |
| 21 | 0.0 | 334.0 | 0.0 | 0.0 |
| 22 | 0.0 | 0.0 | 332.0 | 2.0 |
| 23 | 333.0 | 0.0 | 1.0 | 0.0 |
| 24 | 19.0 | 274.0 | 24.0 | 17.0 |
| 25 | 135.0 | 132.0 | 8.0 | 59.0 |
| 26 | 55.25 | 100.25 | 36.25 | 142.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.355 | 0.313 | 0.229 | 0.103 |
| 02 | 0.355 | 0.388 | 0.16 | 0.097 |
| 03 | 0.314 | 0.392 | 0.048 | 0.246 |
| 04 | 0.257 | 0.365 | 0.09 | 0.287 |
| 05 | 0.377 | 0.189 | 0.15 | 0.284 |
| 06 | 0.464 | 0.129 | 0.165 | 0.243 |
| 07 | 0.29 | 0.18 | 0.362 | 0.168 |
| 08 | 0.114 | 0.09 | 0.482 | 0.314 |
| 09 | 0.012 | 0.216 | 0.009 | 0.763 |
| 10 | 0.0 | 0.799 | 0.189 | 0.012 |
| 11 | 0.189 | 0.015 | 0.796 | 0.0 |
| 12 | 0.808 | 0.156 | 0.021 | 0.015 |
| 13 | 0.072 | 0.91 | 0.009 | 0.009 |
| 14 | 0.225 | 0.416 | 0.012 | 0.347 |
| 15 | 0.228 | 0.084 | 0.033 | 0.656 |
| 16 | 0.228 | 0.111 | 0.12 | 0.542 |
| 17 | 0.805 | 0.012 | 0.015 | 0.168 |
| 18 | 0.389 | 0.036 | 0.473 | 0.102 |
| 19 | 0.018 | 0.0 | 0.97 | 0.012 |
| 20 | 0.0 | 0.0 | 0.0 | 1.0 |
| 21 | 0.0 | 1.0 | 0.0 | 0.0 |
| 22 | 0.0 | 0.0 | 0.994 | 0.006 |
| 23 | 0.997 | 0.0 | 0.003 | 0.0 |
| 24 | 0.057 | 0.82 | 0.072 | 0.051 |
| 25 | 0.404 | 0.395 | 0.024 | 0.177 |
| 26 | 0.165 | 0.3 | 0.109 | 0.426 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.345 | 0.221 | -0.086 | -0.86 |
| 02 | 0.345 | 0.433 | -0.436 | -0.917 |
| 03 | 0.226 | 0.444 | -1.583 | -0.018 |
| 04 | 0.029 | 0.374 | -0.994 | 0.137 |
| 05 | 0.406 | -0.276 | -0.501 | 0.127 |
| 06 | 0.611 | -0.648 | -0.409 | -0.03 |
| 07 | 0.147 | -0.324 | 0.366 | -0.391 |
| 08 | -0.767 | -0.994 | 0.648 | 0.226 |
| 09 | -2.746 | -0.145 | -2.949 | 1.105 |
| 10 | -4.069 | 1.151 | -0.276 | -2.746 |
| 11 | -0.276 | -2.578 | 1.147 | -4.069 |
| 12 | 1.162 | -0.463 | -2.308 | -2.578 |
| 13 | -1.205 | 1.28 | -2.949 | -2.949 |
| 14 | -0.105 | 0.503 | -2.746 | 0.324 |
| 15 | -0.092 | -1.059 | -1.92 | 0.954 |
| 16 | -0.092 | -0.793 | -0.718 | 0.764 |
| 17 | 1.158 | -2.746 | -2.578 | -0.391 |
| 18 | 0.437 | -1.843 | 0.63 | -0.874 |
| 19 | -2.434 | -4.069 | 1.343 | -2.746 |
| 20 | -4.069 | -4.069 | -4.069 | 1.373 |
| 21 | -4.069 | 1.373 | -4.069 | -4.069 |
| 22 | -4.069 | -4.069 | 1.367 | -3.203 |
| 23 | 1.37 | -4.069 | -3.545 | -4.069 |
| 24 | -1.424 | 1.176 | -1.205 | -1.527 |
| 25 | 0.474 | 0.452 | -2.196 | -0.34 |
| 26 | -0.404 | 0.18 | -0.812 | 0.526 |
| P-value | Threshold |
|---|---|
| 0.001 | -0.43359 |
| 0.0005 | 1.07136 |
| 0.0001 | 4.25566 |