| Motif | PRDM10.H13INVITRO.0.PSGI.A |
| Gene (human) | PRDM10 (GeneCards) |
| Gene synonyms (human) | KIAA1231, PFM7, TRIS |
| Gene (mouse) | Prdm10 |
| Gene synonyms (mouse) | Gm1112, Tris |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | PRDM10.H13INVITRO.0.PSGI.A |
| Gene (human) | PRDM10 (GeneCards) |
| Gene synonyms (human) | KIAA1231, PFM7, TRIS |
| Gene (mouse) | Prdm10 |
| Gene synonyms (mouse) | Gm1112, Tris |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 18 |
| Consensus | vhMWTGGTAYvdYCCRhh |
| GC content | 45.56% |
| Information content (bits; total / per base) | 16.193 / 0.9 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 8540 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.672 | 0.683 | 0.56 | 0.58 | 0.581 | 0.585 | 23.655 | 25.167 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 3 experiments | median | 0.999 | 0.999 | 0.856 | 0.869 | 0.692 | 0.728 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | |
| Lysate, 2 experiments | median | 0.982 | 0.982 | 0.817 | 0.831 | 0.67 | 0.703 |
| best | 0.999 | 0.999 | 0.856 | 0.869 | 0.692 | 0.728 | |
| GFPIVT, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| GFPIVT, 1 experiments | median | 335.772 | 0.918 | 0.931 | 0.899 |
| best | 501.658 | 0.925 | 0.938 | 0.905 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.933 | 0.907 | 0.829 | 0.805 | 0.719 | 0.711 |
| best | 0.933 | 0.907 | 0.829 | 0.805 | 0.719 | 0.711 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | Unclassified {2.3.4.0} (TFClass) |
| TFClass ID | TFClass: 2.3.4.0.34 |
| HGNC | HGNC:13995 |
| MGI | MGI:2682952 |
| EntrezGene (human) | GeneID:56980 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | PRD10_HUMAN |
| UniProt ID (mouse) | PRD10_MOUSE |
| UniProt AC (human) | Q9NQV6 (TFClass) |
| UniProt AC (mouse) | Q3UTQ7 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 1 overall: 0 Lysate, 0 IVT, 1 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 0 |
| PCM | PRDM10.H13INVITRO.0.PSGI.A.pcm |
| PWM | PRDM10.H13INVITRO.0.PSGI.A.pwm |
| PFM | PRDM10.H13INVITRO.0.PSGI.A.pfm |
| Threshold to P-value map | PRDM10.H13INVITRO.0.PSGI.A.thr |
| Motif in other formats | |
| JASPAR format | PRDM10.H13INVITRO.0.PSGI.A_jaspar_format.txt |
| MEME format | PRDM10.H13INVITRO.0.PSGI.A_meme_format.meme |
| Transfac format | PRDM10.H13INVITRO.0.PSGI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2812.0 | 2962.0 | 1385.0 | 1381.0 |
| 02 | 4172.75 | 1650.75 | 1043.75 | 1672.75 |
| 03 | 5262.0 | 1666.0 | 1136.0 | 476.0 |
| 04 | 5938.0 | 46.0 | 604.0 | 1952.0 |
| 05 | 36.0 | 18.0 | 19.0 | 8467.0 |
| 06 | 22.0 | 44.0 | 8426.0 | 48.0 |
| 07 | 11.0 | 20.0 | 8491.0 | 18.0 |
| 08 | 357.0 | 17.0 | 27.0 | 8139.0 |
| 09 | 7392.0 | 342.0 | 51.0 | 755.0 |
| 10 | 68.0 | 4843.0 | 317.0 | 3312.0 |
| 11 | 3151.0 | 2239.0 | 3008.0 | 142.0 |
| 12 | 1304.0 | 683.0 | 3755.0 | 2798.0 |
| 13 | 239.0 | 2461.0 | 298.0 | 5542.0 |
| 14 | 154.0 | 8042.0 | 193.0 | 151.0 |
| 15 | 149.0 | 7706.0 | 310.0 | 375.0 |
| 16 | 5473.0 | 384.0 | 1680.0 | 1003.0 |
| 17 | 2604.25 | 1937.25 | 1037.25 | 2961.25 |
| 18 | 1922.75 | 2018.75 | 1178.75 | 3419.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.329 | 0.347 | 0.162 | 0.162 |
| 02 | 0.489 | 0.193 | 0.122 | 0.196 |
| 03 | 0.616 | 0.195 | 0.133 | 0.056 |
| 04 | 0.695 | 0.005 | 0.071 | 0.229 |
| 05 | 0.004 | 0.002 | 0.002 | 0.991 |
| 06 | 0.003 | 0.005 | 0.987 | 0.006 |
| 07 | 0.001 | 0.002 | 0.994 | 0.002 |
| 08 | 0.042 | 0.002 | 0.003 | 0.953 |
| 09 | 0.866 | 0.04 | 0.006 | 0.088 |
| 10 | 0.008 | 0.567 | 0.037 | 0.388 |
| 11 | 0.369 | 0.262 | 0.352 | 0.017 |
| 12 | 0.153 | 0.08 | 0.44 | 0.328 |
| 13 | 0.028 | 0.288 | 0.035 | 0.649 |
| 14 | 0.018 | 0.942 | 0.023 | 0.018 |
| 15 | 0.017 | 0.902 | 0.036 | 0.044 |
| 16 | 0.641 | 0.045 | 0.197 | 0.117 |
| 17 | 0.305 | 0.227 | 0.121 | 0.347 |
| 18 | 0.225 | 0.236 | 0.138 | 0.4 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.275 | 0.327 | -0.432 | -0.435 |
| 02 | 0.67 | -0.257 | -0.715 | -0.244 |
| 03 | 0.901 | -0.248 | -0.63 | -1.497 |
| 04 | 1.022 | -3.791 | -1.26 | -0.09 |
| 05 | -4.023 | -4.658 | -4.61 | 1.377 |
| 06 | -4.478 | -3.833 | 1.372 | -3.75 |
| 07 | -5.082 | -4.564 | 1.38 | -4.658 |
| 08 | -1.783 | -4.709 | -4.291 | 1.337 |
| 09 | 1.241 | -1.826 | -3.692 | -1.038 |
| 10 | -3.415 | 0.818 | -1.901 | 0.439 |
| 11 | 0.389 | 0.048 | 0.343 | -2.696 |
| 12 | -0.492 | -1.137 | 0.564 | 0.27 |
| 13 | -2.181 | 0.142 | -1.963 | 0.953 |
| 14 | -2.616 | 1.325 | -2.393 | -2.635 |
| 15 | -2.648 | 1.283 | -1.923 | -1.734 |
| 16 | 0.941 | -1.711 | -0.239 | -0.754 |
| 17 | 0.198 | -0.097 | -0.721 | 0.327 |
| 18 | -0.105 | -0.056 | -0.593 | 0.471 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.89676 |
| 0.0005 | 3.24626 |
| 0.0001 | 6.05251 |