| Motif | PRDM13.H13RSNP.0.PSGI.D |
| Gene (human) | PRDM13 (GeneCards) |
| Gene synonyms (human) | PFM10 |
| Gene (mouse) | Prdm13 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | PRDM13.H13RSNP.0.PSGI.D |
| Gene (human) | PRDM13 (GeneCards) |
| Gene synonyms (human) | PFM10 |
| Gene (mouse) | Prdm13 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | ndRCWGGTRSbn |
| GC content | 59.96% |
| Information content (bits; total / per base) | 11.143 / 0.929 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 7332 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.845 | 0.856 | 0.692 | 0.701 | 0.767 | 0.777 | 131.281 | 139.602 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 0.993 | 0.99 | 0.951 | 0.939 | 0.823 | 0.824 |
| best | 1.0 | 1.0 | 0.999 | 0.999 | 0.999 | 0.998 | |
| Lysate, 2 experiments | median | 0.975 | 0.967 | 0.897 | 0.887 | 0.77 | 0.773 |
| best | 0.988 | 0.983 | 0.951 | 0.939 | 0.823 | 0.824 | |
| IVT, 1 experiments | median | 0.993 | 0.99 | 0.901 | 0.899 | 0.733 | 0.758 |
| best | 0.993 | 0.99 | 0.901 | 0.899 | 0.733 | 0.758 | |
| GFPIVT, 2 experiments | median | 0.997 | 0.996 | 0.99 | 0.986 | 0.922 | 0.928 |
| best | 1.0 | 1.0 | 0.999 | 0.999 | 0.999 | 0.998 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 5 experiments | median | 194.596 | 0.867 | 0.942 | 0.863 |
| best | 504.036 | 0.956 | 0.973 | 0.914 | |
| Lysate, 2 experiments | median | 456.179 | 0.873 | 0.952 | 0.876 |
| best | 461.398 | 0.88 | 0.953 | 0.878 | |
| IVT, 1 experiments | median | 154.337 | 0.86 | 0.933 | 0.853 |
| best | 154.337 | 0.86 | 0.933 | 0.853 | |
| GFPIVT, 2 experiments | median | 137.921 | 0.868 | 0.931 | 0.821 |
| best | 504.036 | 0.956 | 0.973 | 0.914 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.95 | 0.922 | 0.903 | 0.87 | 0.763 | 0.761 |
| best | 0.95 | 0.922 | 0.903 | 0.87 | 0.763 | 0.761 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | Unclassified {2.3.4.0} (TFClass) |
| TFClass ID | TFClass: 2.3.4.0.12 |
| HGNC | HGNC:13998 |
| MGI | MGI:2448528 |
| EntrezGene (human) | GeneID:59336 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:230025 (SSTAR profile) |
| UniProt ID (human) | PRD13_HUMAN |
| UniProt ID (mouse) | PRD13_MOUSE |
| UniProt AC (human) | Q9H4Q3 (TFClass) |
| UniProt AC (mouse) | E9PZZ1 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 0 |
| PCM | PRDM13.H13RSNP.0.PSGI.D.pcm |
| PWM | PRDM13.H13RSNP.0.PSGI.D.pwm |
| PFM | PRDM13.H13RSNP.0.PSGI.D.pfm |
| Threshold to P-value map | PRDM13.H13RSNP.0.PSGI.D.thr |
| Motif in other formats | |
| JASPAR format | PRDM13.H13RSNP.0.PSGI.D_jaspar_format.txt |
| MEME format | PRDM13.H13RSNP.0.PSGI.D_meme_format.meme |
| Transfac format | PRDM13.H13RSNP.0.PSGI.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1283.5 | 1684.5 | 1971.5 | 2392.5 |
| 02 | 2852.75 | 548.75 | 2453.75 | 1476.75 |
| 03 | 2408.0 | 218.0 | 4499.0 | 207.0 |
| 04 | 7.0 | 7252.0 | 56.0 | 17.0 |
| 05 | 3620.0 | 4.0 | 384.0 | 3324.0 |
| 06 | 0.0 | 0.0 | 7332.0 | 0.0 |
| 07 | 0.0 | 0.0 | 7332.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 7332.0 |
| 09 | 1824.0 | 94.0 | 5240.0 | 174.0 |
| 10 | 447.0 | 1609.0 | 4231.0 | 1045.0 |
| 11 | 846.5 | 2995.5 | 1270.5 | 2219.5 |
| 12 | 1946.75 | 1753.75 | 1825.75 | 1805.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.175 | 0.23 | 0.269 | 0.326 |
| 02 | 0.389 | 0.075 | 0.335 | 0.201 |
| 03 | 0.328 | 0.03 | 0.614 | 0.028 |
| 04 | 0.001 | 0.989 | 0.008 | 0.002 |
| 05 | 0.494 | 0.001 | 0.052 | 0.453 |
| 06 | 0.0 | 0.0 | 1.0 | 0.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1.0 |
| 09 | 0.249 | 0.013 | 0.715 | 0.024 |
| 10 | 0.061 | 0.219 | 0.577 | 0.143 |
| 11 | 0.115 | 0.409 | 0.173 | 0.303 |
| 12 | 0.266 | 0.239 | 0.249 | 0.246 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.356 | -0.084 | 0.073 | 0.266 |
| 02 | 0.442 | -1.203 | 0.291 | -0.216 |
| 03 | 0.273 | -2.12 | 0.897 | -2.172 |
| 04 | -5.293 | 1.374 | -3.451 | -4.559 |
| 05 | 0.68 | -5.686 | -1.559 | 0.595 |
| 06 | -6.715 | -6.715 | 1.385 | -6.715 |
| 07 | -6.715 | -6.715 | 1.385 | -6.715 |
| 08 | -6.715 | -6.715 | -6.715 | 1.385 |
| 09 | -0.005 | -2.948 | 1.05 | -2.343 |
| 10 | -1.407 | -0.13 | 0.836 | -0.561 |
| 11 | -0.771 | 0.491 | -0.366 | 0.191 |
| 12 | 0.06 | -0.044 | -0.004 | -0.015 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.174125 |
| 0.0005 | 5.58997 |
| 0.0001 | 7.782785 |