| Motif | RLF.H13INVIVO.0.PSGI.A |
| Gene (human) | RLF (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | RLF.H13INVIVO.0.PSGI.A |
| Gene (human) | RLF (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 15 |
| Consensus | SCYGCMGCCGCYGCY |
| GC content | 85.94% |
| Information content (bits; total / per base) | 17.552 / 1.17 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 496 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 1 (2) | 0.863 | 0.867 | 0.69 | 0.691 | 0.651 | 0.666 | 35.208 | 41.62 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 2 experiments | median | 0.652 | 0.606 | 0.605 | 0.575 | 0.566 | 0.552 |
| best | 0.652 | 0.608 | 0.611 | 0.577 | 0.576 | 0.556 | |
| IVT, 1 experiments | median | 0.652 | 0.608 | 0.598 | 0.574 | 0.555 | 0.548 |
| best | 0.652 | 0.608 | 0.598 | 0.574 | 0.555 | 0.548 | |
| GFPIVT, 1 experiments | median | 0.651 | 0.604 | 0.611 | 0.577 | 0.576 | 0.556 |
| best | 0.651 | 0.604 | 0.611 | 0.577 | 0.576 | 0.556 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 2 experiments | median | 9.076 | 0.662 | 0.697 | 0.508 |
| best | 48.921 | 0.717 | 0.713 | 0.521 | |
| IVT, 1 experiments | median | 48.921 | 0.662 | 0.713 | 0.521 |
| best | 48.921 | 0.662 | 0.713 | 0.521 | |
| GFPIVT, 1 experiments | median | 8.038 | 0.664 | 0.67 | 0.495 |
| best | 9.076 | 0.717 | 0.697 | 0.508 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.51 | 0.507 | 0.512 | 0.507 | 0.508 | 0.505 |
| best | 0.51 | 0.507 | 0.512 | 0.507 | 0.508 | 0.505 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | RLF-like {2.3.4.7} (TFClass) |
| TFClass ID | TFClass: 2.3.4.7.1 |
| HGNC | HGNC:10025 |
| MGI | |
| EntrezGene (human) | GeneID:6018 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | RLF_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q13129 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 2 overall: 0 Lysate, 1 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 2 overall: 0 Lysate, 1 IVT, 1 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 0 |
| PCM | RLF.H13INVIVO.0.PSGI.A.pcm |
| PWM | RLF.H13INVIVO.0.PSGI.A.pwm |
| PFM | RLF.H13INVIVO.0.PSGI.A.pfm |
| Threshold to P-value map | RLF.H13INVIVO.0.PSGI.A.thr |
| Motif in other formats | |
| JASPAR format | RLF.H13INVIVO.0.PSGI.A_jaspar_format.txt |
| MEME format | RLF.H13INVIVO.0.PSGI.A_meme_format.meme |
| Transfac format | RLF.H13INVIVO.0.PSGI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.0 | 74.0 | 369.0 | 45.0 |
| 02 | 5.0 | 465.0 | 12.0 | 14.0 |
| 03 | 25.0 | 326.0 | 24.0 | 121.0 |
| 04 | 13.0 | 31.0 | 438.0 | 14.0 |
| 05 | 15.0 | 446.0 | 33.0 | 2.0 |
| 06 | 115.0 | 307.0 | 23.0 | 51.0 |
| 07 | 12.0 | 19.0 | 439.0 | 26.0 |
| 08 | 4.0 | 457.0 | 20.0 | 15.0 |
| 09 | 19.0 | 395.0 | 7.0 | 75.0 |
| 10 | 8.0 | 6.0 | 422.0 | 60.0 |
| 11 | 3.0 | 458.0 | 28.0 | 7.0 |
| 12 | 33.0 | 363.0 | 36.0 | 64.0 |
| 13 | 6.0 | 1.0 | 442.0 | 47.0 |
| 14 | 0.0 | 474.0 | 9.0 | 13.0 |
| 15 | 23.0 | 257.0 | 13.0 | 203.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.016 | 0.149 | 0.744 | 0.091 |
| 02 | 0.01 | 0.938 | 0.024 | 0.028 |
| 03 | 0.05 | 0.657 | 0.048 | 0.244 |
| 04 | 0.026 | 0.063 | 0.883 | 0.028 |
| 05 | 0.03 | 0.899 | 0.067 | 0.004 |
| 06 | 0.232 | 0.619 | 0.046 | 0.103 |
| 07 | 0.024 | 0.038 | 0.885 | 0.052 |
| 08 | 0.008 | 0.921 | 0.04 | 0.03 |
| 09 | 0.038 | 0.796 | 0.014 | 0.151 |
| 10 | 0.016 | 0.012 | 0.851 | 0.121 |
| 11 | 0.006 | 0.923 | 0.056 | 0.014 |
| 12 | 0.067 | 0.732 | 0.073 | 0.129 |
| 13 | 0.012 | 0.002 | 0.891 | 0.095 |
| 14 | 0.0 | 0.956 | 0.018 | 0.026 |
| 15 | 0.046 | 0.518 | 0.026 | 0.409 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.576 | -0.508 | 1.082 | -0.992 |
| 02 | -2.953 | 1.313 | -2.226 | -2.089 |
| 03 | -1.554 | 0.959 | -1.592 | -0.024 |
| 04 | -2.155 | -1.35 | 1.253 | -2.089 |
| 05 | -2.026 | 1.271 | -1.29 | -3.565 |
| 06 | -0.074 | 0.899 | -1.632 | -0.871 |
| 07 | -2.226 | -1.81 | 1.255 | -1.517 |
| 08 | -3.119 | 1.295 | -1.762 | -2.026 |
| 09 | -1.81 | 1.15 | -2.687 | -0.495 |
| 10 | -2.576 | -2.811 | 1.216 | -0.713 |
| 11 | -3.317 | 1.298 | -1.447 | -2.687 |
| 12 | -1.29 | 1.066 | -1.207 | -0.65 |
| 13 | -2.811 | -3.896 | 1.262 | -0.95 |
| 14 | -4.393 | 1.332 | -2.476 | -2.155 |
| 15 | -1.632 | 0.722 | -2.155 | 0.488 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.26261 |
| 0.0005 | 3.45106 |
| 0.0001 | 5.97136 |