| Motif | RXRG.H13RSNP.2.P.B |
| Gene (human) | RXRG (GeneCards) |
| Gene synonyms (human) | NR2B3 |
| Gene (mouse) | Rxrg |
| Gene synonyms (mouse) | Nr2b3 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | B |
| Motif | RXRG.H13RSNP.2.P.B |
| Gene (human) | RXRG (GeneCards) |
| Gene synonyms (human) | NR2B3 |
| Gene (mouse) | Rxrg |
| Gene synonyms (mouse) | Nr2b3 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | B |
| Motif length | 23 |
| Consensus | vvddRnKSMdRAGKTCARGGbSR |
| GC content | 52.9% |
| Information content (bits; total / per base) | 18.668 / 0.812 |
| Data sources | ChIP-Seq |
| Aligned words | 131 |
| Previous names | RXRG.H12RSNP.2.P.B |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 3 (14) | 0.695 | 0.935 | 0.617 | 0.881 | 0.69 | 0.952 | 4.17 | 8.853 | 44.26 | 209.013 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 5 experiments | median | 0.968 | 0.951 | 0.921 | 0.9 | 0.785 | 0.785 |
| best | 0.975 | 0.957 | 0.961 | 0.938 | 0.931 | 0.903 | |
| Methyl HT-SELEX, 1 experiments | median | 0.975 | 0.957 | 0.961 | 0.938 | 0.931 | 0.903 |
| best | 0.975 | 0.957 | 0.961 | 0.938 | 0.931 | 0.903 | |
| Non-Methyl HT-SELEX, 4 experiments | median | 0.967 | 0.949 | 0.901 | 0.882 | 0.758 | 0.764 |
| best | 0.973 | 0.957 | 0.944 | 0.917 | 0.879 | 0.853 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.591 | 0.109 | 0.082 | 0.157 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | RXR-related receptors {2.1.3} (TFClass) |
| TF subfamily | RXR (NR2B) {2.1.3.1} (TFClass) |
| TFClass ID | TFClass: 2.1.3.1.3 |
| HGNC | HGNC:10479 |
| MGI | MGI:98216 |
| EntrezGene (human) | GeneID:6258 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20183 (SSTAR profile) |
| UniProt ID (human) | RXRG_HUMAN |
| UniProt ID (mouse) | RXRG_MOUSE |
| UniProt AC (human) | P48443 (TFClass) |
| UniProt AC (mouse) | P28705 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 3 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 1 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | RXRG.H13RSNP.2.P.B.pcm |
| PWM | RXRG.H13RSNP.2.P.B.pwm |
| PFM | RXRG.H13RSNP.2.P.B.pfm |
| Threshold to P-value map | RXRG.H13RSNP.2.P.B.thr |
| Motif in other formats | |
| JASPAR format | RXRG.H13RSNP.2.P.B_jaspar_format.txt |
| MEME format | RXRG.H13RSNP.2.P.B_meme_format.meme |
| Transfac format | RXRG.H13RSNP.2.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 32.0 | 19.0 | 70.0 | 10.0 |
| 02 | 26.0 | 20.0 | 68.0 | 17.0 |
| 03 | 60.0 | 8.0 | 48.0 | 15.0 |
| 04 | 28.0 | 14.0 | 74.0 | 15.0 |
| 05 | 20.0 | 17.0 | 80.0 | 14.0 |
| 06 | 41.0 | 13.0 | 64.0 | 13.0 |
| 07 | 8.0 | 9.0 | 27.0 | 87.0 |
| 08 | 11.0 | 78.0 | 29.0 | 13.0 |
| 09 | 79.0 | 21.0 | 16.0 | 15.0 |
| 10 | 47.0 | 14.0 | 49.0 | 21.0 |
| 11 | 57.0 | 5.0 | 68.0 | 1.0 |
| 12 | 102.0 | 0.0 | 28.0 | 1.0 |
| 13 | 3.0 | 0.0 | 127.0 | 1.0 |
| 14 | 1.0 | 1.0 | 53.0 | 76.0 |
| 15 | 0.0 | 3.0 | 0.0 | 128.0 |
| 16 | 2.0 | 124.0 | 4.0 | 1.0 |
| 17 | 129.0 | 1.0 | 0.0 | 1.0 |
| 18 | 91.0 | 7.0 | 26.0 | 7.0 |
| 19 | 13.0 | 5.0 | 111.0 | 2.0 |
| 20 | 6.0 | 5.0 | 115.0 | 5.0 |
| 21 | 16.0 | 21.0 | 23.0 | 71.0 |
| 22 | 4.0 | 88.0 | 23.0 | 16.0 |
| 23 | 102.0 | 5.0 | 13.0 | 11.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.244 | 0.145 | 0.534 | 0.076 |
| 02 | 0.198 | 0.153 | 0.519 | 0.13 |
| 03 | 0.458 | 0.061 | 0.366 | 0.115 |
| 04 | 0.214 | 0.107 | 0.565 | 0.115 |
| 05 | 0.153 | 0.13 | 0.611 | 0.107 |
| 06 | 0.313 | 0.099 | 0.489 | 0.099 |
| 07 | 0.061 | 0.069 | 0.206 | 0.664 |
| 08 | 0.084 | 0.595 | 0.221 | 0.099 |
| 09 | 0.603 | 0.16 | 0.122 | 0.115 |
| 10 | 0.359 | 0.107 | 0.374 | 0.16 |
| 11 | 0.435 | 0.038 | 0.519 | 0.008 |
| 12 | 0.779 | 0.0 | 0.214 | 0.008 |
| 13 | 0.023 | 0.0 | 0.969 | 0.008 |
| 14 | 0.008 | 0.008 | 0.405 | 0.58 |
| 15 | 0.0 | 0.023 | 0.0 | 0.977 |
| 16 | 0.015 | 0.947 | 0.031 | 0.008 |
| 17 | 0.985 | 0.008 | 0.0 | 0.008 |
| 18 | 0.695 | 0.053 | 0.198 | 0.053 |
| 19 | 0.099 | 0.038 | 0.847 | 0.015 |
| 20 | 0.046 | 0.038 | 0.878 | 0.038 |
| 21 | 0.122 | 0.16 | 0.176 | 0.542 |
| 22 | 0.031 | 0.672 | 0.176 | 0.122 |
| 23 | 0.779 | 0.038 | 0.099 | 0.084 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.022 | -0.519 | 0.74 | -1.108 |
| 02 | -0.222 | -0.471 | 0.712 | -0.623 |
| 03 | 0.589 | -1.304 | 0.371 | -0.739 |
| 04 | -0.151 | -0.803 | 0.795 | -0.739 |
| 05 | -0.471 | -0.623 | 0.872 | -0.803 |
| 06 | 0.217 | -0.871 | 0.652 | -0.871 |
| 07 | -1.304 | -1.201 | -0.185 | 0.954 |
| 08 | -1.022 | 0.847 | -0.117 | -0.871 |
| 09 | 0.859 | -0.425 | -0.679 | -0.739 |
| 10 | 0.35 | -0.803 | 0.391 | -0.425 |
| 11 | 0.539 | -1.698 | 0.712 | -2.728 |
| 12 | 1.111 | -3.328 | -0.151 | -2.728 |
| 13 | -2.086 | -3.328 | 1.328 | -2.728 |
| 14 | -2.728 | -2.728 | 0.468 | 0.821 |
| 15 | -3.328 | -2.086 | -3.328 | 1.336 |
| 16 | -2.356 | 1.305 | -1.873 | -2.728 |
| 17 | 1.344 | -2.728 | -3.328 | -2.728 |
| 18 | 0.999 | -1.419 | -0.222 | -1.419 |
| 19 | -0.871 | -1.698 | 1.195 | -2.356 |
| 20 | -1.549 | -1.698 | 1.23 | -1.698 |
| 21 | -0.679 | -0.425 | -0.338 | 0.754 |
| 22 | -1.873 | 0.966 | -0.338 | -0.679 |
| 23 | 1.111 | -1.698 | -0.871 | -1.022 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.40921 |
| 0.0005 | 3.57376 |
| 0.0001 | 6.04171 |