| Motif | SALL3.H13RSNP.0.PSG.D |
| Gene (human) | SALL3 (GeneCards) |
| Gene synonyms (human) | ZNF796 |
| Gene (mouse) | Sall3 |
| Gene synonyms (mouse) | Sal |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SALL3.H13RSNP.0.PSG.D |
| Gene (human) | SALL3 (GeneCards) |
| Gene synonyms (human) | ZNF796 |
| Gene (mouse) | Sall3 |
| Gene synonyms (mouse) | Sal |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 19 |
| Consensus | nnvWTATGAATWATdWWWh |
| GC content | 19.15% |
| Information content (bits; total / per base) | 18.505 / 0.974 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX |
| Aligned words | 7071 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 1 (2) | 0.794 | 0.795 | 0.658 | 0.659 | 0.654 | 0.67 | 4.697 | 5.102 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 8 experiments | median | 0.982 | 0.974 | 0.948 | 0.932 | 0.803 | 0.803 |
| best | 0.997 | 0.995 | 0.988 | 0.983 | 0.964 | 0.954 | |
| Lysate, 4 experiments | median | 0.99 | 0.984 | 0.968 | 0.958 | 0.859 | 0.871 |
| best | 0.996 | 0.993 | 0.988 | 0.983 | 0.964 | 0.954 | |
| IVT, 2 experiments | median | 0.898 | 0.866 | 0.74 | 0.744 | 0.612 | 0.646 |
| best | 0.922 | 0.889 | 0.843 | 0.807 | 0.703 | 0.706 | |
| GFPIVT, 2 experiments | median | 0.971 | 0.957 | 0.945 | 0.924 | 0.892 | 0.869 |
| best | 0.997 | 0.995 | 0.986 | 0.981 | 0.94 | 0.93 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 8 experiments | median | 91.915 | 0.827 | 0.877 | 0.846 |
| best | 493.721 | 0.943 | 0.95 | 0.896 | |
| Lysate, 4 experiments | median | 407.558 | 0.841 | 0.93 | 0.859 |
| best | 493.721 | 0.872 | 0.946 | 0.884 | |
| IVT, 2 experiments | median | 53.812 | 0.667 | 0.792 | 0.658 |
| best | 77.77 | 0.717 | 0.852 | 0.741 | |
| GFPIVT, 2 experiments | median | 36.742 | 0.753 | 0.807 | 0.705 |
| best | 106.06 | 0.943 | 0.95 | 0.896 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | SAL-like {2.3.4.3} (TFClass) |
| TFClass ID | TFClass: 2.3.4.3.3 |
| HGNC | HGNC:10527 |
| MGI | MGI:109295 |
| EntrezGene (human) | GeneID:27164 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20689 (SSTAR profile) |
| UniProt ID (human) | SALL3_HUMAN |
| UniProt ID (mouse) | SALL3_MOUSE |
| UniProt AC (human) | Q9BXA9 (TFClass) |
| UniProt AC (mouse) | Q62255 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 8 overall: 4 Lysate, 2 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 8 overall: 4 Lysate, 2 IVT, 2 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | SALL3.H13RSNP.0.PSG.D.pcm |
| PWM | SALL3.H13RSNP.0.PSG.D.pwm |
| PFM | SALL3.H13RSNP.0.PSG.D.pfm |
| Threshold to P-value map | SALL3.H13RSNP.0.PSG.D.thr |
| Motif in other formats | |
| JASPAR format | SALL3.H13RSNP.0.PSG.D_jaspar_format.txt |
| MEME format | SALL3.H13RSNP.0.PSG.D_meme_format.meme |
| Transfac format | SALL3.H13RSNP.0.PSG.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1500.5 | 1277.5 | 2297.5 | 1995.5 |
| 02 | 2388.75 | 1367.75 | 2282.75 | 1031.75 |
| 03 | 2121.0 | 1139.0 | 3574.0 | 237.0 |
| 04 | 2584.0 | 39.0 | 141.0 | 4307.0 |
| 05 | 10.0 | 19.0 | 3.0 | 7039.0 |
| 06 | 7068.0 | 0.0 | 0.0 | 3.0 |
| 07 | 0.0 | 2.0 | 1.0 | 7068.0 |
| 08 | 0.0 | 17.0 | 4185.0 | 2869.0 |
| 09 | 7006.0 | 10.0 | 46.0 | 9.0 |
| 10 | 6376.0 | 33.0 | 118.0 | 544.0 |
| 11 | 940.0 | 38.0 | 20.0 | 6073.0 |
| 12 | 2024.0 | 803.0 | 40.0 | 4204.0 |
| 13 | 5261.0 | 64.0 | 32.0 | 1714.0 |
| 14 | 146.0 | 435.0 | 479.0 | 6011.0 |
| 15 | 2424.0 | 547.0 | 3273.0 | 827.0 |
| 16 | 5135.0 | 235.0 | 325.0 | 1376.0 |
| 17 | 2527.0 | 426.0 | 286.0 | 3832.0 |
| 18 | 3276.0 | 525.0 | 332.0 | 2938.0 |
| 19 | 2134.25 | 920.25 | 399.25 | 3617.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.212 | 0.181 | 0.325 | 0.282 |
| 02 | 0.338 | 0.193 | 0.323 | 0.146 |
| 03 | 0.3 | 0.161 | 0.505 | 0.034 |
| 04 | 0.365 | 0.006 | 0.02 | 0.609 |
| 05 | 0.001 | 0.003 | 0.0 | 0.995 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.0 | 0.002 | 0.592 | 0.406 |
| 09 | 0.991 | 0.001 | 0.007 | 0.001 |
| 10 | 0.902 | 0.005 | 0.017 | 0.077 |
| 11 | 0.133 | 0.005 | 0.003 | 0.859 |
| 12 | 0.286 | 0.114 | 0.006 | 0.595 |
| 13 | 0.744 | 0.009 | 0.005 | 0.242 |
| 14 | 0.021 | 0.062 | 0.068 | 0.85 |
| 15 | 0.343 | 0.077 | 0.463 | 0.117 |
| 16 | 0.726 | 0.033 | 0.046 | 0.195 |
| 17 | 0.357 | 0.06 | 0.04 | 0.542 |
| 18 | 0.463 | 0.074 | 0.047 | 0.415 |
| 19 | 0.302 | 0.13 | 0.056 | 0.512 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.164 | -0.324 | 0.262 | 0.121 |
| 02 | 0.301 | -0.256 | 0.255 | -0.538 |
| 03 | 0.182 | -0.439 | 0.703 | -2.001 |
| 04 | 0.379 | -3.76 | -2.514 | 0.89 |
| 05 | -4.976 | -4.424 | -5.827 | 1.381 |
| 06 | 1.385 | -6.683 | -6.683 | -5.827 |
| 07 | -6.683 | -6.04 | -6.311 | 1.385 |
| 08 | -6.683 | -4.523 | 0.861 | 0.484 |
| 09 | 1.376 | -4.976 | -3.603 | -5.061 |
| 10 | 1.282 | -3.917 | -2.689 | -1.176 |
| 11 | -0.63 | -3.784 | -4.378 | 1.233 |
| 12 | 0.135 | -0.788 | -3.736 | 0.866 |
| 13 | 1.09 | -3.286 | -3.946 | -0.031 |
| 14 | -2.48 | -1.398 | -1.302 | 1.223 |
| 15 | 0.315 | -1.17 | 0.615 | -0.758 |
| 16 | 1.066 | -2.01 | -1.688 | -0.25 |
| 17 | 0.357 | -1.419 | -1.815 | 0.773 |
| 18 | 0.616 | -1.211 | -1.667 | 0.508 |
| 19 | 0.188 | -0.652 | -1.484 | 0.715 |
| P-value | Threshold |
|---|---|
| 0.001 | -0.58324 |
| 0.0005 | 1.12511 |
| 0.0001 | 4.66356 |