| Motif | SETBP1.H13INVIVO.0.B.D |
| Gene (human) | SETBP1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Setbp1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SETBP1.H13INVIVO.0.B.D |
| Gene (human) | SETBP1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Setbp1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 14 |
| Consensus | nACdnvdAAWdhAd |
| GC content | 32.23% |
| Information content (bits; total / per base) | 9.481 / 0.677 |
| Data sources | PBM |
| Aligned words | 519 |
| Previous names |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.828 | 0.017 | 0.86 | 0.069 |
| best | 0.916 | 0.093 | 0.903 | 0.138 | |
| TF superclass | beta-Sheet binding to DNA {8} (TFClass) |
| TF class | A.T hook factors {8.2} (TFClass) |
| TF family | Unannotated {8.2.255} (TFClass) |
| TF subfamily | {8.2.255.0} (TFClass) |
| TFClass ID | TFClass: 8.2.255.0.5 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | SETBP_HUMAN |
| UniProt ID (mouse) | SETBP_MOUSE |
| UniProt AC (human) | Q9Y6X0 (TFClass) |
| UniProt AC (mouse) | Q9Z180 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 6 |
| PCM | SETBP1.H13INVIVO.0.B.D.pcm |
| PWM | SETBP1.H13INVIVO.0.B.D.pwm |
| PFM | SETBP1.H13INVIVO.0.B.D.pfm |
| Threshold to P-value map | SETBP1.H13INVIVO.0.B.D.thr |
| Motif in other formats | |
| JASPAR format | SETBP1.H13INVIVO.0.B.D_jaspar_format.txt |
| MEME format | SETBP1.H13INVIVO.0.B.D_meme_format.meme |
| Transfac format | SETBP1.H13INVIVO.0.B.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 119.0 | 130.0 | 125.0 | 145.0 |
| 02 | 267.0 | 0.0 | 252.0 | 0.0 |
| 03 | 0.0 | 519.0 | 0.0 | 0.0 |
| 04 | 61.0 | 56.0 | 274.0 | 128.0 |
| 05 | 137.0 | 126.0 | 183.0 | 73.0 |
| 06 | 229.0 | 64.0 | 163.0 | 63.0 |
| 07 | 284.0 | 19.0 | 102.0 | 114.0 |
| 08 | 441.0 | 0.0 | 0.0 | 78.0 |
| 09 | 408.0 | 0.0 | 0.0 | 111.0 |
| 10 | 250.0 | 12.0 | 30.0 | 227.0 |
| 11 | 254.0 | 31.0 | 54.0 | 180.0 |
| 12 | 268.0 | 48.0 | 46.0 | 157.0 |
| 13 | 400.0 | 0.0 | 0.0 | 119.0 |
| 14 | 199.0 | 43.0 | 65.0 | 212.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.229 | 0.25 | 0.241 | 0.279 |
| 02 | 0.514 | 0.0 | 0.486 | 0.0 |
| 03 | 0.0 | 1.0 | 0.0 | 0.0 |
| 04 | 0.118 | 0.108 | 0.528 | 0.247 |
| 05 | 0.264 | 0.243 | 0.353 | 0.141 |
| 06 | 0.441 | 0.123 | 0.314 | 0.121 |
| 07 | 0.547 | 0.037 | 0.197 | 0.22 |
| 08 | 0.85 | 0.0 | 0.0 | 0.15 |
| 09 | 0.786 | 0.0 | 0.0 | 0.214 |
| 10 | 0.482 | 0.023 | 0.058 | 0.437 |
| 11 | 0.489 | 0.06 | 0.104 | 0.347 |
| 12 | 0.516 | 0.092 | 0.089 | 0.303 |
| 13 | 0.771 | 0.0 | 0.0 | 0.229 |
| 14 | 0.383 | 0.083 | 0.125 | 0.408 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.085 | 0.002 | -0.037 | 0.11 |
| 02 | 0.716 | -4.431 | 0.658 | -4.431 |
| 03 | -4.431 | 1.377 | -4.431 | -4.431 |
| 04 | -0.741 | -0.825 | 0.741 | -0.013 |
| 05 | 0.054 | -0.029 | 0.34 | -0.566 |
| 06 | 0.563 | -0.695 | 0.226 | -0.71 |
| 07 | 0.777 | -1.854 | -0.237 | -0.128 |
| 08 | 1.215 | -4.431 | -4.431 | -0.501 |
| 09 | 1.138 | -4.431 | -4.431 | -0.154 |
| 10 | 0.65 | -2.27 | -1.426 | 0.554 |
| 11 | 0.666 | -1.394 | -0.86 | 0.324 |
| 12 | 0.719 | -0.974 | -1.016 | 0.189 |
| 13 | 1.118 | -4.431 | -4.431 | -0.085 |
| 14 | 0.424 | -1.081 | -0.679 | 0.486 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.13586 |
| 0.0005 | 5.90371 |
| 0.0001 | 7.31266 |