| Motif | SP9.H13RSNP.0.P.B |
| Gene (human) | SP9 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sp9 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | SP9.H13RSNP.0.P.B |
| Gene (human) | SP9 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sp9 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 9 |
| Consensus | WAATKAYAG |
| GC content | 24.51% |
| Information content (bits; total / per base) | 10.641 / 1.182 |
| Data sources | ChIP-Seq |
| Aligned words | 1001 |
| Previous names | SP9.H12RSNP.0.P.B |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 2 (14) | 0.859 | 0.9 | 0.778 | 0.807 | 0.828 | 0.875 | 2.89 | 3.036 | 135.287 | 164.602 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.528 | 0.515 | 0.524 | 0.513 | 0.52 | 0.511 |
| best | 0.528 | 0.515 | 0.524 | 0.513 | 0.52 | 0.511 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.619 | 0.026 | 0.537 | 0.556 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Three-zinc finger Kruppel-related {2.3.1} (TFClass) |
| TF subfamily | Sp1-like {2.3.1.1} (TFClass) |
| TFClass ID | TFClass: 2.3.1.1.9 |
| HGNC | HGNC:30690 |
| MGI | MGI:3574660 |
| EntrezGene (human) | GeneID:100131390 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:381373 (SSTAR profile) |
| UniProt ID (human) | SP9_HUMAN |
| UniProt ID (mouse) | SP9_MOUSE |
| UniProt AC (human) | P0CG40 (TFClass) |
| UniProt AC (mouse) | Q64HY3 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 2 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | SP9.H13RSNP.0.P.B.pcm |
| PWM | SP9.H13RSNP.0.P.B.pwm |
| PFM | SP9.H13RSNP.0.P.B.pfm |
| Threshold to P-value map | SP9.H13RSNP.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | SP9.H13RSNP.0.P.B_jaspar_format.txt |
| MEME format | SP9.H13RSNP.0.P.B_meme_format.meme |
| Transfac format | SP9.H13RSNP.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 177.0 | 38.0 | 34.0 | 752.0 |
| 02 | 899.0 | 18.0 | 70.0 | 14.0 |
| 03 | 980.0 | 6.0 | 11.0 | 4.0 |
| 04 | 22.0 | 16.0 | 14.0 | 949.0 |
| 05 | 58.0 | 62.0 | 111.0 | 770.0 |
| 06 | 817.0 | 9.0 | 160.0 | 15.0 |
| 07 | 38.0 | 644.0 | 78.0 | 241.0 |
| 08 | 812.0 | 13.0 | 45.0 | 131.0 |
| 09 | 34.0 | 43.0 | 836.0 | 88.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.177 | 0.038 | 0.034 | 0.751 |
| 02 | 0.898 | 0.018 | 0.07 | 0.014 |
| 03 | 0.979 | 0.006 | 0.011 | 0.004 |
| 04 | 0.022 | 0.016 | 0.014 | 0.948 |
| 05 | 0.058 | 0.062 | 0.111 | 0.769 |
| 06 | 0.816 | 0.009 | 0.16 | 0.015 |
| 07 | 0.038 | 0.643 | 0.078 | 0.241 |
| 08 | 0.811 | 0.013 | 0.045 | 0.131 |
| 09 | 0.034 | 0.043 | 0.835 | 0.088 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.343 | -1.847 | -1.953 | 1.096 |
| 02 | 1.274 | -2.547 | -1.256 | -2.774 |
| 03 | 1.36 | -3.485 | -2.986 | -3.784 |
| 04 | -2.363 | -2.654 | -2.774 | 1.328 |
| 05 | -1.44 | -1.375 | -0.804 | 1.119 |
| 06 | 1.178 | -3.157 | -0.443 | -2.712 |
| 07 | -1.847 | 0.941 | -1.151 | -0.037 |
| 08 | 1.172 | -2.84 | -1.685 | -0.641 |
| 09 | -1.953 | -1.729 | 1.201 | -1.033 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.53975 |
| 0.0005 | 5.413565 |
| 0.0001 | 7.18313 |