| Motif | TBX20.H13RSNP.2.SM.B |
| Gene (human) | TBX20 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tbx20 |
| Gene synonyms (mouse) | Tbx12 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | B |
| Motif | TBX20.H13RSNP.2.SM.B |
| Gene (human) | TBX20 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tbx20 |
| Gene synonyms (mouse) | Tbx12 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | B |
| Motif length | 19 |
| Consensus | ndAGGTGTGARRKTSWbWn |
| GC content | 46.57% |
| Information content (bits; total / per base) | 19.323 / 1.017 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 2472 |
| Previous names | TBX20.H12RSNP.2.SM.B |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (7) | 0.549 | 0.557 | 0.377 | 0.382 | 0.572 | 0.585 | 1.28 | 1.343 | 1.056 | 1.553 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.985 | 0.979 | 0.895 | 0.889 | 0.758 | 0.768 |
| best | 0.996 | 0.995 | 0.976 | 0.97 | 0.873 | 0.873 | |
| Methyl HT-SELEX, 2 experiments | median | 0.924 | 0.909 | 0.831 | 0.818 | 0.72 | 0.722 |
| best | 0.983 | 0.976 | 0.93 | 0.915 | 0.807 | 0.805 | |
| Non-Methyl HT-SELEX, 4 experiments | median | 0.989 | 0.985 | 0.91 | 0.905 | 0.789 | 0.796 |
| best | 0.996 | 0.995 | 0.976 | 0.97 | 0.873 | 0.873 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.728 | 0.147 | 0.674 | 0.427 |
| batch 2 | 0.8 | 0.579 | 0.78 | 0.551 |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | T-Box factors {6.5} (TFClass) |
| TF family | TBX1-related {6.5.3} (TFClass) |
| TF subfamily | {6.5.3.0} (TFClass) |
| TFClass ID | TFClass: 6.5.3.0.5 |
| HGNC | HGNC:11598 |
| MGI | MGI:1888496 |
| EntrezGene (human) | GeneID:57057 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:57246 (SSTAR profile) |
| UniProt ID (human) | TBX20_HUMAN |
| UniProt ID (mouse) | TBX20_MOUSE |
| UniProt AC (human) | Q9UMR3 (TFClass) |
| UniProt AC (mouse) | Q9ES03 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 2 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | TBX20.H13RSNP.2.SM.B.pcm |
| PWM | TBX20.H13RSNP.2.SM.B.pwm |
| PFM | TBX20.H13RSNP.2.SM.B.pfm |
| Threshold to P-value map | TBX20.H13RSNP.2.SM.B.thr |
| Motif in other formats | |
| JASPAR format | TBX20.H13RSNP.2.SM.B_jaspar_format.txt |
| MEME format | TBX20.H13RSNP.2.SM.B_meme_format.meme |
| Transfac format | TBX20.H13RSNP.2.SM.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 803.25 | 480.25 | 688.25 | 500.25 |
| 02 | 637.75 | 193.75 | 1042.75 | 597.75 |
| 03 | 2244.0 | 15.0 | 179.0 | 34.0 |
| 04 | 44.0 | 20.0 | 2385.0 | 23.0 |
| 05 | 6.0 | 6.0 | 2459.0 | 1.0 |
| 06 | 2.0 | 27.0 | 11.0 | 2432.0 |
| 07 | 3.0 | 4.0 | 2464.0 | 1.0 |
| 08 | 34.0 | 21.0 | 8.0 | 2409.0 |
| 09 | 13.0 | 117.0 | 1959.0 | 383.0 |
| 10 | 2425.0 | 2.0 | 35.0 | 10.0 |
| 11 | 1922.0 | 71.0 | 361.0 | 118.0 |
| 12 | 546.0 | 174.0 | 1451.0 | 301.0 |
| 13 | 337.0 | 53.0 | 1529.0 | 553.0 |
| 14 | 148.0 | 163.0 | 139.0 | 2022.0 |
| 15 | 343.0 | 427.0 | 1604.0 | 98.0 |
| 16 | 651.0 | 181.0 | 195.0 | 1445.0 |
| 17 | 120.0 | 684.0 | 1295.0 | 373.0 |
| 18 | 1961.25 | 140.25 | 174.25 | 196.25 |
| 19 | 894.0 | 696.0 | 419.0 | 463.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.325 | 0.194 | 0.278 | 0.202 |
| 02 | 0.258 | 0.078 | 0.422 | 0.242 |
| 03 | 0.908 | 0.006 | 0.072 | 0.014 |
| 04 | 0.018 | 0.008 | 0.965 | 0.009 |
| 05 | 0.002 | 0.002 | 0.995 | 0.0 |
| 06 | 0.001 | 0.011 | 0.004 | 0.984 |
| 07 | 0.001 | 0.002 | 0.997 | 0.0 |
| 08 | 0.014 | 0.008 | 0.003 | 0.975 |
| 09 | 0.005 | 0.047 | 0.792 | 0.155 |
| 10 | 0.981 | 0.001 | 0.014 | 0.004 |
| 11 | 0.778 | 0.029 | 0.146 | 0.048 |
| 12 | 0.221 | 0.07 | 0.587 | 0.122 |
| 13 | 0.136 | 0.021 | 0.619 | 0.224 |
| 14 | 0.06 | 0.066 | 0.056 | 0.818 |
| 15 | 0.139 | 0.173 | 0.649 | 0.04 |
| 16 | 0.263 | 0.073 | 0.079 | 0.585 |
| 17 | 0.049 | 0.277 | 0.524 | 0.151 |
| 18 | 0.793 | 0.057 | 0.07 | 0.079 |
| 19 | 0.362 | 0.282 | 0.169 | 0.187 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.261 | -0.251 | 0.107 | -0.211 |
| 02 | 0.031 | -1.153 | 0.522 | -0.033 |
| 03 | 1.287 | -3.599 | -1.231 | -2.847 |
| 04 | -2.602 | -3.341 | 1.348 | -3.213 |
| 05 | -4.356 | -4.356 | 1.379 | -5.347 |
| 06 | -5.055 | -3.064 | -3.868 | 1.368 |
| 07 | -4.83 | -4.646 | 1.381 | -5.347 |
| 08 | -2.847 | -3.296 | -4.132 | 1.358 |
| 09 | -3.725 | -1.651 | 1.152 | -0.477 |
| 10 | 1.365 | -5.055 | -2.82 | -3.949 |
| 11 | 1.132 | -2.14 | -0.535 | -1.643 |
| 12 | -0.123 | -1.259 | 0.852 | -0.716 |
| 13 | -0.604 | -2.423 | 0.904 | -0.111 |
| 14 | -1.419 | -1.324 | -1.481 | 1.183 |
| 15 | -0.586 | -0.368 | 0.952 | -1.825 |
| 16 | 0.052 | -1.22 | -1.147 | 0.848 |
| 17 | -1.626 | 0.101 | 0.738 | -0.503 |
| 18 | 1.153 | -1.472 | -1.258 | -1.14 |
| 19 | 0.368 | 0.119 | -0.387 | -0.288 |
| P-value | Threshold |
|---|---|
| 0.001 | 0.21521 |
| 0.0005 | 1.70101 |
| 0.0001 | 4.82486 |