Motif | TCF21.H13RSNP.1.SM.B |
Gene (human) | TCF21 (GeneCards) |
Gene synonyms (human) | BHLHA23, POD1 |
Gene (mouse) | Tcf21 |
Gene synonyms (mouse) | Pod1 |
LOGO | ![]() |
LOGO (reverse complement) | ![]() |
Motif subtype | 1 |
Quality | B |
Motif | TCF21.H13RSNP.1.SM.B |
Gene (human) | TCF21 (GeneCards) |
Gene synonyms (human) | BHLHA23, POD1 |
Gene (mouse) | Tcf21 |
Gene synonyms (mouse) | Pod1 |
LOGO | ![]() |
LOGO (reverse complement) | ![]() |
Motif subtype | 1 |
Quality | B |
Motif length | 13 |
Consensus | nRvCATATGGYvn |
GC content | 45.75% |
Information content (bits; total / per base) | 14.106 / 1.085 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 2163 |
Previous names | TCF21.H12RSNP.1.SM.B |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 3 (9) | 0.763 | 0.77 | 0.537 | 0.555 | 0.646 | 0.654 | 1.437 | 1.482 | 64.42 | 72.553 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 5 experiments | median | 0.855 | 0.809 | 0.773 | 0.732 | 0.681 | 0.663 |
best | 0.995 | 0.993 | 0.938 | 0.93 | 0.794 | 0.804 | |
Methyl HT-SELEX, 1 experiments | median | 0.995 | 0.993 | 0.938 | 0.93 | 0.794 | 0.804 |
best | 0.995 | 0.993 | 0.938 | 0.93 | 0.794 | 0.804 | |
Non-Methyl HT-SELEX, 4 experiments | median | 0.793 | 0.76 | 0.701 | 0.678 | 0.626 | 0.62 |
best | 0.968 | 0.957 | 0.901 | 0.88 | 0.784 | 0.777 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 2 | 0.794 | 0.276 | 0.808 | 0.488 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
TF family | Tal-related {1.2.3} (TFClass) |
TF subfamily | MESP {1.2.3.3} (TFClass) |
TFClass ID | TFClass: 1.2.3.3.5 |
HGNC | HGNC:11632 |
MGI | MGI:1202715 |
EntrezGene (human) | GeneID:6943 (SSTAR profile) |
EntrezGene (mouse) | GeneID:21412 (SSTAR profile) |
UniProt ID (human) | TCF21_HUMAN |
UniProt ID (mouse) | TCF21_MOUSE |
UniProt AC (human) | O43680 (TFClass) |
UniProt AC (mouse) | O35437 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 3 human, 0 mouse |
HT-SELEX | 4 |
Methyl-HT-SELEX | 1 |
Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
SMiLE-Seq | 0 |
PBM | 0 |
PCM | TCF21.H13RSNP.1.SM.B.pcm |
PWM | TCF21.H13RSNP.1.SM.B.pwm |
PFM | TCF21.H13RSNP.1.SM.B.pfm |
Threshold to P-value map | TCF21.H13RSNP.1.SM.B.thr |
Motif in other formats | |
JASPAR format | TCF21.H13RSNP.1.SM.B_jaspar_format.txt |
MEME format | TCF21.H13RSNP.1.SM.B_meme_format.meme |
Transfac format | TCF21.H13RSNP.1.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 491.75 | 514.75 | 655.75 | 500.75 |
02 | 1353.25 | 221.25 | 357.25 | 231.25 |
03 | 741.0 | 907.0 | 454.0 | 61.0 |
04 | 7.0 | 2149.0 | 7.0 | 0.0 |
05 | 2071.0 | 0.0 | 92.0 | 0.0 |
06 | 0.0 | 1.0 | 68.0 | 2094.0 |
07 | 2098.0 | 64.0 | 1.0 | 0.0 |
08 | 2.0 | 0.0 | 0.0 | 2161.0 |
09 | 0.0 | 0.0 | 2161.0 | 2.0 |
10 | 2.0 | 15.0 | 1839.0 | 307.0 |
11 | 231.0 | 1034.0 | 30.0 | 868.0 |
12 | 702.75 | 387.75 | 858.75 | 213.75 |
13 | 540.0 | 553.0 | 493.0 | 577.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.227 | 0.238 | 0.303 | 0.232 |
02 | 0.626 | 0.102 | 0.165 | 0.107 |
03 | 0.343 | 0.419 | 0.21 | 0.028 |
04 | 0.003 | 0.994 | 0.003 | 0.0 |
05 | 0.957 | 0.0 | 0.043 | 0.0 |
06 | 0.0 | 0.0 | 0.031 | 0.968 |
07 | 0.97 | 0.03 | 0.0 | 0.0 |
08 | 0.001 | 0.0 | 0.0 | 0.999 |
09 | 0.0 | 0.0 | 0.999 | 0.001 |
10 | 0.001 | 0.007 | 0.85 | 0.142 |
11 | 0.107 | 0.478 | 0.014 | 0.401 |
12 | 0.325 | 0.179 | 0.397 | 0.099 |
13 | 0.25 | 0.256 | 0.228 | 0.267 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.095 | -0.049 | 0.192 | -0.077 |
02 | 0.915 | -0.889 | -0.413 | -0.845 |
03 | 0.314 | 0.516 | -0.174 | -2.155 |
04 | -4.108 | 1.377 | -4.108 | -5.644 |
05 | 1.34 | -5.644 | -1.754 | -5.644 |
06 | -5.644 | -5.225 | -2.049 | 1.351 |
07 | 1.353 | -2.108 | -5.225 | -5.644 |
08 | -4.93 | -5.644 | -5.644 | 1.383 |
09 | -5.644 | -5.644 | 1.383 | -4.93 |
10 | -4.93 | -3.468 | 1.222 | -0.563 |
11 | -0.846 | 0.647 | -2.833 | 0.472 |
12 | 0.261 | -0.331 | 0.461 | -0.923 |
13 | -0.001 | 0.022 | -0.092 | 0.065 |
P-value | Threshold |
---|---|
0.001 | 2.21181 |
0.0005 | 3.591265 |
0.0001 | 6.71423 |