TERF1.H13INVIVO.0.PSGB.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TERF1.H13INVIVO.0.PSGB.A
Gene (human)	TERF1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Terf1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	vRRRbhRGRGbhRGRGnbRRR
GC content	69.69%
Information content (bits; total / per base)	13.195 / 0.628
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + PBM
Aligned words	498
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.706	0.726	0.532	0.54	0.747	0.767	4.659	6.187

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Lysate, 2 experiments	median	0.832	0.776	0.757	0.713	0.682	0.657
Lysate, 2 experiments	best	0.873	0.817	0.812	0.76	0.739	0.701

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 2 experiments	median	80.474	0.928	0.884	0.739
Lysate, 2 experiments	best	137.921	0.972	0.922	0.777

PBM benchmarking		auROC, QNZS	auPR, QNZS	auROC, SD	auPR, SD
Overall, 6 experiments	median	0.677	0.011	0.605	0.016
Overall, 6 experiments	best	0.681	0.015	0.649	0.016

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Tryptophan cluster factors {3.5} (TFClass)
TF family	Myb/SANT domain {3.5.1} (TFClass)
TF subfamily	Other Myb-like {3.5.1.0} (TFClass)
TFClass ID	TFClass: 3.5.1.0.256
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	TERF1_HUMAN
UniProt ID (mouse)	TERF1_MOUSE
UniProt AC (human)	P54274 (TFClass)
UniProt AC (mouse)	P70371 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 2 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	2 overall: 2 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	6

PCM	TERF1.H13INVIVO.0.PSGB.A.pcm
PWM	TERF1.H13INVIVO.0.PSGB.A.pwm
PFM	TERF1.H13INVIVO.0.PSGB.A.pfm
Threshold to P-value map	TERF1.H13INVIVO.0.PSGB.A.thr
Motif in other formats
JASPAR format	TERF1.H13INVIVO.0.PSGB.A_jaspar_format.txt
MEME format	TERF1.H13INVIVO.0.PSGB.A_meme_format.meme
Transfac format	TERF1.H13INVIVO.0.PSGB.A_transfac_format.txt
Homer format	TERF1.H13INVIVO.0.PSGB.A_homer_format_0.001.txt TERF1.H13INVIVO.0.PSGB.A_homer_format_0.0005.txt TERF1.H13INVIVO.0.PSGB.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	186.0	76.0	205.0	31.0
02	78.0	31.0	377.0	12.0
03	141.0	56.0	274.0	27.0
04	84.0	23.0	355.0	36.0
05	45.0	105.0	241.0	107.0
06	150.0	135.0	54.0	159.0
07	201.0	14.0	265.0	18.0
08	65.0	20.0	402.0	11.0
09	95.0	35.0	345.0	23.0
10	32.0	34.0	411.0	21.0
11	34.0	107.0	221.0	136.0
12	57.0	235.0	24.0	182.0
13	171.0	19.0	249.0	59.0
14	6.0	59.0	414.0	19.0
15	108.0	40.0	342.0	8.0
16	15.0	22.0	457.0	4.0
17	71.0	173.0	100.0	154.0
18	32.0	46.0	224.0	196.0
19	213.0	63.0	208.0	14.0
20	68.0	30.0	382.0	18.0
21	67.0	47.0	368.0	16.0

PFM

	A	C	G	T
01	0.373	0.153	0.412	0.062
02	0.157	0.062	0.757	0.024
03	0.283	0.112	0.55	0.054
04	0.169	0.046	0.713	0.072
05	0.09	0.211	0.484	0.215
06	0.301	0.271	0.108	0.319
07	0.404	0.028	0.532	0.036
08	0.131	0.04	0.807	0.022
09	0.191	0.07	0.693	0.046
10	0.064	0.068	0.825	0.042
11	0.068	0.215	0.444	0.273
12	0.114	0.472	0.048	0.365
13	0.343	0.038	0.5	0.118
14	0.012	0.118	0.831	0.038
15	0.217	0.08	0.687	0.016
16	0.03	0.044	0.918	0.008
17	0.143	0.347	0.201	0.309
18	0.064	0.092	0.45	0.394
19	0.428	0.127	0.418	0.028
20	0.137	0.06	0.767	0.036
21	0.135	0.094	0.739	0.032

PWM

	A	C	G	T
01	0.397	-0.486	0.494	-1.354
02	-0.46	-1.354	1.1	-2.23
03	0.123	-0.784	0.782	-1.485
04	-0.388	-1.636	1.04	-1.211
05	-0.996	-0.168	0.655	-0.149
06	0.184	0.08	-0.819	0.242
07	0.474	-2.092	0.749	-1.864
08	-0.639	-1.766	1.164	-2.307
09	-0.267	-1.238	1.011	-1.636
10	-1.324	-1.266	1.186	-1.721
11	-1.266	-0.149	0.568	0.087
12	-0.767	0.629	-1.596	0.376
13	0.314	-1.814	0.687	-0.733
14	-2.815	-0.733	1.193	-1.814
15	-0.14	-1.11	1.003	-2.58
16	-2.03	-1.677	1.291	-3.122
17	-0.552	0.326	-0.216	0.21
18	-1.324	-0.975	0.582	0.449
19	0.532	-0.669	0.508	-2.092
20	-0.595	-1.385	1.113	-1.864
21	-0.609	-0.954	1.076	-1.971

Standard thresholds

P-value	Threshold
0.001	4.00491
0.0005	4.93746
0.0001	6.91036