| Motif | TERF1.H13RSNP.0.PSGB.D |
| Gene (human) | TERF1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Terf1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | TERF1.H13RSNP.0.PSGB.D |
| Gene (human) | TERF1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Terf1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 8 |
| Consensus | dAGGGTWn |
| GC content | 52.48% |
| Information content (bits; total / per base) | 9.378 / 1.172 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + PBM |
| Aligned words | 757 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.667 | 0.681 | 0.536 | 0.556 | 0.594 | 0.608 | 5.656 | 7.131 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Lysate, 2 experiments | median | 1.0 | 1.0 | 0.955 | 0.96 | 0.845 | 0.871 |
| best | 1.0 | 1.0 | 0.998 | 0.998 | 0.994 | 0.992 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| Lysate, 2 experiments | median | 112.474 | 0.917 | 0.942 | 0.831 |
| best | 364.398 | 0.938 | 0.962 | 0.872 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 5 experiments | median | 0.837 | 0.202 | 0.946 | 0.487 |
| best | 0.97 | 0.4 | 0.947 | 0.499 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Myb/SANT domain {3.5.1} (TFClass) |
| TF subfamily | Other Myb-like {3.5.1.0} (TFClass) |
| TFClass ID | TFClass: 3.5.1.0.256 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | TERF1_HUMAN |
| UniProt ID (mouse) | TERF1_MOUSE |
| UniProt AC (human) | P54274 (TFClass) |
| UniProt AC (mouse) | P70371 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 2 overall: 2 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 2 overall: 2 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 5 |
| PCM | TERF1.H13RSNP.0.PSGB.D.pcm |
| PWM | TERF1.H13RSNP.0.PSGB.D.pwm |
| PFM | TERF1.H13RSNP.0.PSGB.D.pfm |
| Threshold to P-value map | TERF1.H13RSNP.0.PSGB.D.thr |
| Motif in other formats | |
| JASPAR format | TERF1.H13RSNP.0.PSGB.D_jaspar_format.txt |
| MEME format | TERF1.H13RSNP.0.PSGB.D_meme_format.meme |
| Transfac format | TERF1.H13RSNP.0.PSGB.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 156.0 | 95.0 | 129.0 | 377.0 |
| 02 | 595.0 | 3.0 | 155.0 | 4.0 |
| 03 | 0.0 | 1.0 | 756.0 | 0.0 |
| 04 | 0.0 | 0.0 | 757.0 | 0.0 |
| 05 | 5.0 | 0.0 | 747.0 | 5.0 |
| 06 | 14.0 | 120.0 | 0.0 | 623.0 |
| 07 | 194.0 | 40.0 | 10.0 | 513.0 |
| 08 | 267.0 | 178.0 | 187.0 | 125.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.206 | 0.125 | 0.17 | 0.498 |
| 02 | 0.786 | 0.004 | 0.205 | 0.005 |
| 03 | 0.0 | 0.001 | 0.999 | 0.0 |
| 04 | 0.0 | 0.0 | 1.0 | 0.0 |
| 05 | 0.007 | 0.0 | 0.987 | 0.007 |
| 06 | 0.018 | 0.159 | 0.0 | 0.823 |
| 07 | 0.256 | 0.053 | 0.013 | 0.678 |
| 08 | 0.353 | 0.235 | 0.247 | 0.165 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.191 | -0.681 | -0.379 | 0.685 |
| 02 | 1.14 | -3.713 | -0.198 | -3.519 |
| 03 | -4.747 | -4.274 | 1.378 | -4.747 |
| 04 | -4.747 | -4.747 | 1.38 | -4.747 |
| 05 | -3.356 | -4.747 | 1.366 | -3.356 |
| 06 | -2.501 | -0.451 | -4.747 | 1.185 |
| 07 | 0.025 | -1.522 | -2.796 | 0.992 |
| 08 | 0.342 | -0.061 | -0.012 | -0.41 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.377 |
| 0.0005 | 6.154045 |
| 0.0001 | 7.334525 |