MotifTET3.H13CORE.0.PSGIB.A
Gene (human)TET3
(GeneCards)
Gene synonyms (human)KIAA0401
Gene (mouse)Tet3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length18
ConsensusndbACGTRvvKdvvRvvv
GC content60.37%
Information content (bits; total / per base)11.265 / 0.626
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words845
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (2) 0.693 0.698 0.469 0.472 0.56 0.57 0.0 0.0

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 4 experiments median 0.813 0.739 0.778 0.709 0.724 0.672
best 0.838 0.769 0.802 0.735 0.754 0.697
Lysate, 2 experiments median 0.813 0.739 0.778 0.709 0.724 0.672
best 0.832 0.762 0.795 0.728 0.739 0.687
IVT, 1 experiments median 0.838 0.769 0.802 0.735 0.754 0.697
best 0.838 0.769 0.802 0.735 0.754 0.697
GFPIVT, 1 experiments median 0.713 0.647 0.693 0.63 0.649 0.605
best 0.713 0.647 0.693 0.63 0.649 0.605

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 3 experiments median 7.886 0.601 0.803 0.626
best 55.367 0.623 0.853 0.699
Lysate, 2 experiments median 7.316 0.585 0.813 0.623
best 55.367 0.62 0.853 0.699
GFPIVT, 1 experiments median 27.886 0.601 0.762 0.626
best 28.201 0.623 0.825 0.645

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.658 0.604 0.618 0.58 0.578 0.558
best 0.658 0.604 0.618 0.58 0.578 0.558

PBM benchmarking auROC, QNZS auPR, QNZS auROC, SD auPR, SD
Overall, 4 experiments median 0.867 0.023 0.884 0.113
best 0.886 0.024 0.91 0.129
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classCXXC zinc finger factors {2.6} (TFClass)
TF familyCpG-binding {2.6.1} (TFClass)
TF subfamily {2.6.1.0} (TFClass)
TFClass IDTFClass: 2.6.1.0.8
HGNCHGNC:28313
MGIMGI:2446229
EntrezGene (human)GeneID:200424
(SSTAR profile)
EntrezGene (mouse)GeneID:194388
(SSTAR profile)
UniProt ID (human)TET3_HUMAN
UniProt ID (mouse)TET3_MOUSE
UniProt AC (human)O43151
(TFClass)
UniProt AC (mouse)Q8BG87
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 2 human, 0 mouse
HT-SELEX 4 overall: 2 Lysate, 1 IVT, 1 GFPIVT
Genomic HT-SELEX 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 1
PBM 4
PCM
ACGT
01160.75215.75319.75148.75
02107.0104.0328.0306.0
0393.0115.0145.0492.0
04713.03.0118.011.0
051.0833.010.01.0
060.00.0843.02.0
075.015.039.0786.0
08437.049.0294.065.0
09431.0105.0255.054.0
1097.0207.0460.081.0
11101.072.0558.0114.0
12149.079.0473.0144.0
13219.086.0469.071.0
14189.0152.0452.052.0
15169.078.0505.093.0
16130.0134.0489.092.0
17126.5173.5443.5101.5
18149.75185.75373.75135.75
PFM
ACGT
010.190.2550.3780.176
020.1270.1230.3880.362
030.110.1360.1720.582
040.8440.0040.140.013
050.0010.9860.0120.001
060.00.00.9980.002
070.0060.0180.0460.93
080.5170.0580.3480.077
090.510.1240.3020.064
100.1150.2450.5440.096
110.120.0850.660.135
120.1760.0930.560.17
130.2590.1020.5550.084
140.2240.180.5350.062
150.20.0920.5980.11
160.1540.1590.5790.109
170.150.2050.5250.12
180.1770.220.4420.161
PWM
ACGT
01-0.2710.0210.412-0.347
02-0.673-0.7010.4370.368
03-0.81-0.602-0.3730.841
041.211-3.817-0.576-2.821
05-4.3731.366-2.903-4.373
06-4.839-4.8391.378-4.057
07-3.461-2.546-1.6551.308
080.723-1.4350.328-1.161
090.709-0.6910.187-1.341
10-0.769-0.020.774-0.946
11-0.729-1.0610.966-0.61
12-0.346-0.970.802-0.38
130.036-0.8870.793-1.075
14-0.11-0.3260.756-1.378
15-0.221-0.9830.867-0.81
16-0.481-0.4510.835-0.821
17-0.508-0.1950.738-0.724
18-0.341-0.1280.567-0.438
Standard thresholds
P-value Threshold
0.001 4.51321
0.0005 5.42376
0.0001 7.23526