| Motif | TIGD4.H13INVIVO.0.PSGI.A |
| Gene (human) | TIGD4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd4 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | TIGD4.H13INVIVO.0.PSGI.A |
| Gene (human) | TIGD4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd4 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 15 |
| Consensus | bYYbnhWRYAMMGCb |
| GC content | 54.17% |
| Information content (bits; total / per base) | 8.804 / 0.587 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 1000 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.812 | 0.839 | 0.691 | 0.72 | 0.617 | 0.632 | 77.705 | 93.886 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 0.541 | 0.538 | 0.538 | 0.527 | 0.534 | 0.522 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Lysate, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| IVT, 1 experiments | median | 0.523 | 0.512 | 0.522 | 0.511 | 0.517 | 0.51 |
| best | 0.523 | 0.512 | 0.522 | 0.511 | 0.517 | 0.51 | |
| GFPIVT, 2 experiments | median | 0.541 | 0.53 | 0.538 | 0.524 | 0.534 | 0.52 |
| best | 0.541 | 0.538 | 0.538 | 0.527 | 0.534 | 0.522 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 3 experiments | median | 98.114 | 0.759 | 0.81 | 0.787 |
| best | 227.42 | 0.937 | 0.952 | 0.944 | |
| Lysate, 2 experiments | median | 106.153 | 0.887 | 0.918 | 0.91 |
| best | 227.42 | 0.937 | 0.952 | 0.944 | |
| GFPIVT, 1 experiments | median | 0.0 | 0.417 | 0.487 | 0.334 |
| best | 2.678 | 0.466 | 0.502 | 0.388 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 3 experiments | median | 0.592 | 0.575 | 0.56 | 0.548 | 0.543 | 0.534 |
| best | 0.62 | 0.576 | 0.611 | 0.567 | 0.596 | 0.559 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Other {3.0} (TFClass) |
| TF family | CENPB {3.0.256} (TFClass) |
| TF subfamily | {3.0.256.0} (TFClass) |
| TFClass ID | TFClass: 3.0.256.0.3 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | TIGD4_HUMAN |
| UniProt ID (mouse) | TIGD4_MOUSE |
| UniProt AC (human) | Q8IY51 (TFClass) |
| UniProt AC (mouse) | Q8BUZ3 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT |
| SMiLE-Seq | 3 |
| PBM | 0 |
| PCM | TIGD4.H13INVIVO.0.PSGI.A.pcm |
| PWM | TIGD4.H13INVIVO.0.PSGI.A.pwm |
| PFM | TIGD4.H13INVIVO.0.PSGI.A.pfm |
| Threshold to P-value map | TIGD4.H13INVIVO.0.PSGI.A.thr |
| Motif in other formats | |
| JASPAR format | TIGD4.H13INVIVO.0.PSGI.A_jaspar_format.txt |
| MEME format | TIGD4.H13INVIVO.0.PSGI.A_meme_format.meme |
| Transfac format | TIGD4.H13INVIVO.0.PSGI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 85.0 | 505.0 | 173.0 | 237.0 |
| 02 | 100.0 | 538.0 | 59.0 | 303.0 |
| 03 | 73.0 | 465.0 | 60.0 | 402.0 |
| 04 | 63.0 | 418.0 | 347.0 | 172.0 |
| 05 | 158.0 | 240.0 | 332.0 | 270.0 |
| 06 | 210.0 | 358.0 | 134.0 | 298.0 |
| 07 | 184.0 | 87.0 | 86.0 | 643.0 |
| 08 | 628.0 | 32.0 | 172.0 | 168.0 |
| 09 | 145.0 | 232.0 | 51.0 | 572.0 |
| 10 | 858.0 | 4.0 | 9.0 | 129.0 |
| 11 | 471.0 | 269.0 | 256.0 | 4.0 |
| 12 | 144.0 | 698.0 | 131.0 | 27.0 |
| 13 | 81.0 | 6.0 | 907.0 | 6.0 |
| 14 | 22.0 | 945.0 | 14.0 | 19.0 |
| 15 | 98.0 | 174.0 | 424.0 | 304.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.085 | 0.505 | 0.173 | 0.237 |
| 02 | 0.1 | 0.538 | 0.059 | 0.303 |
| 03 | 0.073 | 0.465 | 0.06 | 0.402 |
| 04 | 0.063 | 0.418 | 0.347 | 0.172 |
| 05 | 0.158 | 0.24 | 0.332 | 0.27 |
| 06 | 0.21 | 0.358 | 0.134 | 0.298 |
| 07 | 0.184 | 0.087 | 0.086 | 0.643 |
| 08 | 0.628 | 0.032 | 0.172 | 0.168 |
| 09 | 0.145 | 0.232 | 0.051 | 0.572 |
| 10 | 0.858 | 0.004 | 0.009 | 0.129 |
| 11 | 0.471 | 0.269 | 0.256 | 0.004 |
| 12 | 0.144 | 0.698 | 0.131 | 0.027 |
| 13 | 0.081 | 0.006 | 0.907 | 0.006 |
| 14 | 0.022 | 0.945 | 0.014 | 0.019 |
| 15 | 0.098 | 0.174 | 0.424 | 0.304 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.066 | 0.7 | -0.365 | -0.053 |
| 02 | -0.906 | 0.763 | -1.422 | 0.191 |
| 03 | -1.215 | 0.617 | -1.406 | 0.472 |
| 04 | -1.358 | 0.511 | 0.326 | -0.371 |
| 05 | -0.455 | -0.041 | 0.282 | 0.076 |
| 06 | -0.173 | 0.357 | -0.618 | 0.175 |
| 07 | -0.304 | -1.043 | -1.054 | 0.94 |
| 08 | 0.917 | -2.01 | -0.371 | -0.394 |
| 09 | -0.54 | -0.074 | -1.563 | 0.824 |
| 10 | 1.228 | -3.783 | -3.156 | -0.655 |
| 11 | 0.63 | 0.073 | 0.024 | -3.783 |
| 12 | -0.547 | 1.022 | -0.64 | -2.171 |
| 13 | -1.113 | -3.484 | 1.284 | -3.484 |
| 14 | -2.362 | 1.325 | -2.773 | -2.497 |
| 15 | -0.926 | -0.359 | 0.525 | 0.194 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.95806 |
| 0.0005 | 5.69486 |
| 0.0001 | 7.16756 |