| Motif | TIGD4.H13RSNP.0.PSGI.D |
| Gene (human) | TIGD4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd4 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | TIGD4.H13RSNP.0.PSGI.D |
| Gene (human) | TIGD4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd4 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 17 |
| Consensus | dACCCCGTTAvTRYSMM |
| GC content | 48.86% |
| Information content (bits; total / per base) | 17.983 / 1.058 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 6089 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.548 | 0.554 | 0.367 | 0.368 | 0.425 | 0.432 | 1.178 | 1.398 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 0.912 | 0.893 | 0.713 | 0.736 | 0.609 | 0.639 |
| best | 0.93 | 0.916 | 0.895 | 0.852 | 0.84 | 0.797 | |
| Lysate, 2 experiments | median | 0.93 | 0.891 | 0.895 | 0.851 | 0.839 | 0.797 |
| best | 0.93 | 0.893 | 0.895 | 0.852 | 0.84 | 0.797 | |
| IVT, 1 experiments | median | 0.865 | 0.871 | 0.662 | 0.696 | 0.571 | 0.609 |
| best | 0.865 | 0.871 | 0.662 | 0.696 | 0.571 | 0.609 | |
| GFPIVT, 2 experiments | median | 0.91 | 0.913 | 0.712 | 0.734 | 0.607 | 0.638 |
| best | 0.912 | 0.916 | 0.713 | 0.736 | 0.609 | 0.639 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 3 experiments | median | 18.745 | 0.544 | 0.698 | 0.54 |
| best | 23.194 | 0.672 | 0.751 | 0.699 | |
| Lysate, 2 experiments | median | 11.149 | 0.541 | 0.695 | 0.536 |
| best | 23.194 | 0.557 | 0.728 | 0.586 | |
| GFPIVT, 1 experiments | median | 20.638 | 0.604 | 0.704 | 0.596 |
| best | 20.699 | 0.672 | 0.751 | 0.699 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 3 experiments | median | 0.949 | 0.943 | 0.816 | 0.809 | 0.676 | 0.695 |
| best | 0.997 | 0.997 | 0.97 | 0.966 | 0.827 | 0.84 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Other {3.0} (TFClass) |
| TF family | CENPB {3.0.256} (TFClass) |
| TF subfamily | {3.0.256.0} (TFClass) |
| TFClass ID | TFClass: 3.0.256.0.3 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | TIGD4_HUMAN |
| UniProt ID (mouse) | TIGD4_MOUSE |
| UniProt AC (human) | Q8IY51 (TFClass) |
| UniProt AC (mouse) | Q8BUZ3 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT |
| SMiLE-Seq | 3 |
| PBM | 0 |
| PCM | TIGD4.H13RSNP.0.PSGI.D.pcm |
| PWM | TIGD4.H13RSNP.0.PSGI.D.pwm |
| PFM | TIGD4.H13RSNP.0.PSGI.D.pfm |
| Threshold to P-value map | TIGD4.H13RSNP.0.PSGI.D.thr |
| Motif in other formats | |
| JASPAR format | TIGD4.H13RSNP.0.PSGI.D_jaspar_format.txt |
| MEME format | TIGD4.H13RSNP.0.PSGI.D_meme_format.meme |
| Transfac format | TIGD4.H13RSNP.0.PSGI.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2873.25 | 611.25 | 1512.25 | 1092.25 |
| 02 | 4966.0 | 551.0 | 398.0 | 174.0 |
| 03 | 128.0 | 5724.0 | 105.0 | 132.0 |
| 04 | 89.0 | 5496.0 | 112.0 | 392.0 |
| 05 | 66.0 | 5378.0 | 74.0 | 571.0 |
| 06 | 21.0 | 5353.0 | 604.0 | 111.0 |
| 07 | 64.0 | 266.0 | 5672.0 | 87.0 |
| 08 | 1145.0 | 104.0 | 47.0 | 4793.0 |
| 09 | 19.0 | 75.0 | 11.0 | 5984.0 |
| 10 | 5792.0 | 218.0 | 41.0 | 38.0 |
| 11 | 2777.0 | 745.0 | 2188.0 | 379.0 |
| 12 | 87.0 | 603.0 | 280.0 | 5119.0 |
| 13 | 4445.0 | 185.0 | 1268.0 | 191.0 |
| 14 | 562.0 | 3708.0 | 563.0 | 1256.0 |
| 15 | 477.0 | 1561.0 | 3905.0 | 146.0 |
| 16 | 4467.75 | 769.75 | 492.75 | 358.75 |
| 17 | 3662.5 | 1578.5 | 377.5 | 470.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.472 | 0.1 | 0.248 | 0.179 |
| 02 | 0.816 | 0.09 | 0.065 | 0.029 |
| 03 | 0.021 | 0.94 | 0.017 | 0.022 |
| 04 | 0.015 | 0.903 | 0.018 | 0.064 |
| 05 | 0.011 | 0.883 | 0.012 | 0.094 |
| 06 | 0.003 | 0.879 | 0.099 | 0.018 |
| 07 | 0.011 | 0.044 | 0.932 | 0.014 |
| 08 | 0.188 | 0.017 | 0.008 | 0.787 |
| 09 | 0.003 | 0.012 | 0.002 | 0.983 |
| 10 | 0.951 | 0.036 | 0.007 | 0.006 |
| 11 | 0.456 | 0.122 | 0.359 | 0.062 |
| 12 | 0.014 | 0.099 | 0.046 | 0.841 |
| 13 | 0.73 | 0.03 | 0.208 | 0.031 |
| 14 | 0.092 | 0.609 | 0.092 | 0.206 |
| 15 | 0.078 | 0.256 | 0.641 | 0.024 |
| 16 | 0.734 | 0.126 | 0.081 | 0.059 |
| 17 | 0.601 | 0.259 | 0.062 | 0.077 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.635 | -0.91 | -0.007 | -0.331 |
| 02 | 1.181 | -1.014 | -1.337 | -2.158 |
| 03 | -2.46 | 1.323 | -2.655 | -2.43 |
| 04 | -2.817 | 1.283 | -2.592 | -1.353 |
| 05 | -3.107 | 1.261 | -2.996 | -0.978 |
| 06 | -4.186 | 1.256 | -0.922 | -2.6 |
| 07 | -3.137 | -1.738 | 1.314 | -2.839 |
| 08 | -0.284 | -2.664 | -3.434 | 1.146 |
| 09 | -4.276 | -2.983 | -4.751 | 1.368 |
| 10 | 1.335 | -1.935 | -3.564 | -3.636 |
| 11 | 0.601 | -0.713 | 0.362 | -1.386 |
| 12 | -2.839 | -0.924 | -1.687 | 1.212 |
| 13 | 1.071 | -2.097 | -0.182 | -2.066 |
| 14 | -0.994 | 0.889 | -0.992 | -0.192 |
| 15 | -1.157 | 0.025 | 0.941 | -2.331 |
| 16 | 1.076 | -0.68 | -1.125 | -1.441 |
| 17 | 0.877 | 0.036 | -1.39 | -1.171 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.68031 |
| 0.0005 | 2.95151 |
| 0.0001 | 5.63851 |