| Motif | TIGD5.H13CORE.0.SGI.A |
| Gene (human) | TIGD5 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd5 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | TIGD5.H13CORE.0.SGI.A |
| Gene (human) | TIGD5 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tigd5 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 18 |
| Consensus | vCCYSShTATAACGCKbn |
| GC content | 55.39% |
| Information content (bits; total / per base) | 20.889 / 1.16 |
| Data sources | HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 9807 |
| Previous names |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.999 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Lysate, 2 experiments | median | 0.768 | 0.7 | 0.742 | 0.676 | 0.695 | 0.645 |
| best | 0.791 | 0.723 | 0.764 | 0.695 | 0.72 | 0.664 | |
| IVT, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.999 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.999 | |
| GFPIVT, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 5 experiments | median | 37.796 | 0.656 | 0.703 | 0.705 |
| best | 374.119 | 0.949 | 0.967 | 0.953 | |
| Lysate, 2 experiments | median | 0.072 | 0.497 | 0.599 | 0.415 |
| best | 9.076 | 0.558 | 0.631 | 0.434 | |
| IVT, 1 experiments | median | 308.921 | 0.949 | 0.967 | 0.953 |
| best | 308.921 | 0.949 | 0.967 | 0.953 | |
| GFPIVT, 2 experiments | median | 188.939 | 0.88 | 0.933 | 0.91 |
| best | 374.119 | 0.911 | 0.961 | 0.934 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.996 | 0.996 | 0.987 | 0.982 | 0.967 | 0.958 |
| best | 0.998 | 0.998 | 0.996 | 0.994 | 0.99 | 0.986 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Other {3.0} (TFClass) |
| TF family | CENPB {3.0.256} (TFClass) |
| TF subfamily | {3.0.256.0} (TFClass) |
| TFClass ID | TFClass: 3.0.256.0.4 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | TIGD5_HUMAN |
| UniProt ID (mouse) | TIGD5_MOUSE |
| UniProt AC (human) | Q53EQ6 (TFClass) |
| UniProt AC (mouse) | Q499M4 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| SMiLE-Seq | 2 |
| PBM | 0 |
| PCM | TIGD5.H13CORE.0.SGI.A.pcm |
| PWM | TIGD5.H13CORE.0.SGI.A.pwm |
| PFM | TIGD5.H13CORE.0.SGI.A.pfm |
| Threshold to P-value map | TIGD5.H13CORE.0.SGI.A.thr |
| Motif in other formats | |
| JASPAR format | TIGD5.H13CORE.0.SGI.A_jaspar_format.txt |
| MEME format | TIGD5.H13CORE.0.SGI.A_meme_format.meme |
| Transfac format | TIGD5.H13CORE.0.SGI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3006.0 | 4452.0 | 1356.0 | 993.0 |
| 02 | 302.5 | 8687.5 | 431.5 | 385.5 |
| 03 | 174.0 | 8614.0 | 107.0 | 912.0 |
| 04 | 114.0 | 6062.0 | 174.0 | 3457.0 |
| 05 | 35.0 | 6274.0 | 2638.0 | 860.0 |
| 06 | 587.0 | 1637.0 | 6693.0 | 890.0 |
| 07 | 1369.0 | 2197.0 | 960.0 | 5281.0 |
| 08 | 57.0 | 71.0 | 22.0 | 9657.0 |
| 09 | 9705.0 | 5.0 | 59.0 | 38.0 |
| 10 | 22.0 | 48.0 | 3.0 | 9734.0 |
| 11 | 9779.0 | 2.0 | 3.0 | 23.0 |
| 12 | 8530.0 | 824.0 | 448.0 | 5.0 |
| 13 | 33.0 | 9738.0 | 24.0 | 12.0 |
| 14 | 53.0 | 12.0 | 9730.0 | 12.0 |
| 15 | 90.0 | 9638.0 | 25.0 | 54.0 |
| 16 | 662.0 | 604.0 | 5114.0 | 3427.0 |
| 17 | 1193.75 | 5017.75 | 2322.75 | 1272.75 |
| 18 | 2913.0 | 2055.0 | 1722.0 | 3117.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.307 | 0.454 | 0.138 | 0.101 |
| 02 | 0.031 | 0.886 | 0.044 | 0.039 |
| 03 | 0.018 | 0.878 | 0.011 | 0.093 |
| 04 | 0.012 | 0.618 | 0.018 | 0.353 |
| 05 | 0.004 | 0.64 | 0.269 | 0.088 |
| 06 | 0.06 | 0.167 | 0.682 | 0.091 |
| 07 | 0.14 | 0.224 | 0.098 | 0.538 |
| 08 | 0.006 | 0.007 | 0.002 | 0.985 |
| 09 | 0.99 | 0.001 | 0.006 | 0.004 |
| 10 | 0.002 | 0.005 | 0.0 | 0.993 |
| 11 | 0.997 | 0.0 | 0.0 | 0.002 |
| 12 | 0.87 | 0.084 | 0.046 | 0.001 |
| 13 | 0.003 | 0.993 | 0.002 | 0.001 |
| 14 | 0.005 | 0.001 | 0.992 | 0.001 |
| 15 | 0.009 | 0.983 | 0.003 | 0.006 |
| 16 | 0.068 | 0.062 | 0.521 | 0.349 |
| 17 | 0.122 | 0.512 | 0.237 | 0.13 |
| 18 | 0.297 | 0.21 | 0.176 | 0.318 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.204 | 0.596 | -0.592 | -0.902 |
| 02 | -2.086 | 1.264 | -1.733 | -1.845 |
| 03 | -2.633 | 1.256 | -3.111 | -0.987 |
| 04 | -3.049 | 0.905 | -2.633 | 0.343 |
| 05 | -4.187 | 0.939 | 0.073 | -1.046 |
| 06 | -1.427 | -0.403 | 1.004 | -1.012 |
| 07 | -0.582 | -0.11 | -0.936 | 0.767 |
| 08 | -3.723 | -3.511 | -4.615 | 1.37 |
| 09 | 1.375 | -5.818 | -3.69 | -4.109 |
| 10 | -4.615 | -3.888 | -6.138 | 1.378 |
| 11 | 1.383 | -6.347 | -6.138 | -4.575 |
| 12 | 1.246 | -1.089 | -1.696 | -5.818 |
| 13 | -4.242 | 1.379 | -4.536 | -5.145 |
| 14 | -3.793 | -5.145 | 1.378 | -5.145 |
| 15 | -3.28 | 1.368 | -4.499 | -3.775 |
| 16 | -1.307 | -1.398 | 0.735 | 0.335 |
| 17 | -0.719 | 0.716 | -0.054 | -0.655 |
| 18 | 0.172 | -0.176 | -0.353 | 0.24 |
| P-value | Threshold |
|---|---|
| 0.001 | -2.17419 |
| 0.0005 | -0.43019 |
| 0.0001 | 3.25071 |