TIGD7.H13INVITRO.0.SGIB.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TIGD7.H13INVITRO.0.SGIB.A
Gene (human)	TIGD7 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	19
Consensus	nhbYYChnTAATTCGKMMh
GC content	42.64%
Information content (bits; total / per base)	15.232 / 0.802
Data sources	HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words	500
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	1.0	1.0	1.0	1.0	1.0	1.0
overall, 3 experiments	best	1.0	1.0	1.0	1.0	1.0	1.0
IVT, 1 experiments	median	0.717	0.745	0.572	0.614	0.518	0.558
IVT, 1 experiments	best	0.717	0.745	0.572	0.614	0.518	0.558
GFPIVT, 2 experiments	median	1.0	1.0	1.0	1.0	1.0	1.0
GFPIVT, 2 experiments	best	1.0	1.0	1.0	1.0	1.0	1.0

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	685.706	0.94	0.947	0.948
GFPIVT, 2 experiments	best	854.854	0.958	0.972	0.962

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.955	0.947	0.823	0.818	0.677	0.699
Overall, 1 experiments	best	0.955	0.947	0.823	0.818	0.677	0.699

PBM benchmarking		auROC, QNZS	auPR, QNZS	auROC, SD	auPR, SD
Overall, 8 experiments	median	0.7	0.066	0.75	0.066
Overall, 8 experiments	best	0.735	0.074	0.799	0.087

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Other {3.0} (TFClass)
TF family	CENPB {3.0.256} (TFClass)
TF subfamily	{3.0.256.0} (TFClass)
TFClass ID	TFClass: 3.0.256.0.5
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	TIGD7_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6NT04 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	no

ChIP-Seq	0 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	1
PBM	8

PCM	TIGD7.H13INVITRO.0.SGIB.A.pcm
PWM	TIGD7.H13INVITRO.0.SGIB.A.pwm
PFM	TIGD7.H13INVITRO.0.SGIB.A.pfm
Threshold to P-value map	TIGD7.H13INVITRO.0.SGIB.A.thr
Motif in other formats
JASPAR format	TIGD7.H13INVITRO.0.SGIB.A_jaspar_format.txt
MEME format	TIGD7.H13INVITRO.0.SGIB.A_meme_format.meme
Transfac format	TIGD7.H13INVITRO.0.SGIB.A_transfac_format.txt
Homer format	TIGD7.H13INVITRO.0.SGIB.A_homer_format_0.001.txt TIGD7.H13INVITRO.0.SGIB.A_homer_format_0.0005.txt TIGD7.H13INVITRO.0.SGIB.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	117.0	180.0	81.0	122.0
02	209.0	56.0	50.0	185.0
03	57.0	235.0	71.0	137.0
04	39.0	172.0	26.0	263.0
05	4.0	186.0	24.0	286.0
06	1.0	414.0	31.0	54.0
07	151.0	80.0	78.0	191.0
08	79.0	194.0	105.0	122.0
09	5.0	83.0	20.0	392.0
10	482.0	0.0	0.0	18.0
11	419.0	2.0	3.0	76.0
12	31.0	20.0	4.0	445.0
13	8.0	29.0	3.0	460.0
14	6.0	465.0	4.0	25.0
15	51.0	20.0	426.0	3.0
16	14.0	65.0	315.0	106.0
17	375.0	89.0	11.0	25.0
18	142.0	319.0	17.0	22.0
19	110.0	121.0	52.0	217.0

PFM

	A	C	G	T
01	0.234	0.36	0.162	0.244
02	0.418	0.112	0.1	0.37
03	0.114	0.47	0.142	0.274
04	0.078	0.344	0.052	0.526
05	0.008	0.372	0.048	0.572
06	0.002	0.828	0.062	0.108
07	0.302	0.16	0.156	0.382
08	0.158	0.388	0.21	0.244
09	0.01	0.166	0.04	0.784
10	0.964	0.0	0.0	0.036
11	0.838	0.004	0.006	0.152
12	0.062	0.04	0.008	0.89
13	0.016	0.058	0.006	0.92
14	0.012	0.93	0.008	0.05
15	0.102	0.04	0.852	0.006
16	0.028	0.13	0.63	0.212
17	0.75	0.178	0.022	0.05
18	0.284	0.638	0.034	0.044
19	0.22	0.242	0.104	0.434

PWM

	A	C	G	T
01	-0.065	0.361	-0.427	-0.024
02	0.509	-0.788	-0.898	0.388
03	-0.771	0.626	-0.556	0.091
04	-1.138	0.316	-1.525	0.737
05	-3.126	0.393	-1.6	0.821
06	-3.903	1.189	-1.358	-0.823
07	0.187	-0.439	-0.464	0.42
08	-0.452	0.435	-0.172	-0.024
09	-2.961	-0.403	-1.77	1.135
10	1.34	-4.4	-4.4	-1.868
11	1.201	-3.573	-3.325	-0.49
12	-1.358	-1.77	-3.126	1.261
13	-2.584	-1.421	-3.325	1.294
14	-2.819	1.305	-3.126	-1.561
15	-0.879	-1.77	1.217	-3.325
16	-2.096	-0.643	0.917	-0.163
17	1.09	-0.335	-2.311	-1.561
18	0.126	0.929	-1.92	-1.681
19	-0.126	-0.032	-0.86	0.546

Standard thresholds

P-value	Threshold
0.001	3.15241
0.0005	4.26616
0.0001	6.59686