UNC4.H13CORE.0.S.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	UNC4.H13CORE.0.S.B
Gene (human)	UNCX (GeneCards)
Gene synonyms (human)	UNCX4.1
Gene (mouse)	Uncx
Gene synonyms (mouse)	Uncx4.1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	15
Consensus	nddAWYYAATTAvbn
GC content	27.36%
Information content (bits; total / per base)	13.026 / 0.868
Data sources	HT-SELEX
Aligned words	7772
Previous names	UNC4.H12CORE.0.S.B

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 5 experiments	median	0.979	0.973	0.964	0.943	0.924	0.899
Non-Methyl HT-SELEX, 5 experiments	best	0.999	0.998	0.997	0.995	0.963	0.962

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	Paired-related HD {3.1.3} (TFClass)
TF subfamily	UNCX {3.1.3.27} (TFClass)
TFClass ID	TFClass: 3.1.3.27.1
HGNC	HGNC:33194
MGI	MGI:108013
EntrezGene (human)	GeneID:340260 (SSTAR profile)
EntrezGene (mouse)	GeneID:22255 (SSTAR profile)
UniProt ID (human)	UNC4_HUMAN
UniProt ID (mouse)	UNC4_MOUSE
UniProt AC (human)	A6NJT0 (TFClass)
UniProt AC (mouse)	O08934 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	5
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	UNC4.H13CORE.0.S.B.pcm
PWM	UNC4.H13CORE.0.S.B.pwm
PFM	UNC4.H13CORE.0.S.B.pfm
Threshold to P-value map	UNC4.H13CORE.0.S.B.thr
Motif in other formats
JASPAR format	UNC4.H13CORE.0.S.B_jaspar_format.txt
MEME format	UNC4.H13CORE.0.S.B_meme_format.meme
Transfac format	UNC4.H13CORE.0.S.B_transfac_format.txt
Homer format	UNC4.H13CORE.0.S.B_homer_format_0.001.txt UNC4.H13CORE.0.S.B_homer_format_0.0005.txt UNC4.H13CORE.0.S.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1566.0	2075.0	2034.0	2097.0
02	1193.0	1002.0	1056.0	4521.0
03	4587.0	654.0	1579.0	952.0
04	6352.0	384.0	563.0	473.0
05	1149.0	690.0	826.0	5107.0
06	184.0	1607.0	890.0	5091.0
07	785.0	1862.0	602.0	4523.0
08	7254.0	18.0	499.0	1.0
09	7733.0	0.0	39.0	0.0
10	0.0	0.0	0.0	7772.0
11	0.0	9.0	4.0	7759.0
12	7367.0	25.0	259.0	121.0
13	1908.0	1543.0	3675.0	646.0
14	821.0	2932.0	2429.0	1590.0
15	1535.75	2174.75	2465.75	1595.75

PFM

	A	C	G	T
01	0.201	0.267	0.262	0.27
02	0.153	0.129	0.136	0.582
03	0.59	0.084	0.203	0.122
04	0.817	0.049	0.072	0.061
05	0.148	0.089	0.106	0.657
06	0.024	0.207	0.115	0.655
07	0.101	0.24	0.077	0.582
08	0.933	0.002	0.064	0.0
09	0.995	0.0	0.005	0.0
10	0.0	0.0	0.0	1.0
11	0.0	0.001	0.001	0.998
12	0.948	0.003	0.033	0.016
13	0.245	0.199	0.473	0.083
14	0.106	0.377	0.313	0.205
15	0.198	0.28	0.317	0.205

PWM

	A	C	G	T
01	-0.215	0.066	0.046	0.076
02	-0.487	-0.661	-0.609	0.844
03	0.858	-1.087	-0.207	-0.712
04	1.184	-1.617	-1.236	-1.409
05	-0.525	-1.033	-0.854	0.966
06	-2.346	-0.19	-0.779	0.963
07	-0.905	-0.043	-1.169	0.844
08	1.316	-4.566	-1.356	-6.398
09	1.38	-6.767	-3.854	-6.767
10	-6.767	-6.767	-6.767	1.385
11	-6.767	-5.154	-5.742	1.384
12	1.332	-4.268	-2.008	-2.759
13	-0.018	-0.23	0.637	-1.099
14	-0.86	0.411	0.223	-0.2
15	-0.235	0.113	0.238	-0.197

Standard thresholds

P-value	Threshold
0.001	3.46546
0.0005	4.76951
0.0001	7.18801