| Motif | USF3.H13RSNP.0.PSGIB.D |
| Gene (human) | USF3 (GeneCards) |
| Gene synonyms (human) | KIAA2018 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | USF3.H13RSNP.0.PSGIB.D |
| Gene (human) | USF3 (GeneCards) |
| Gene synonyms (human) | KIAA2018 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | dRvYCACGTGGK |
| GC content | 67.25% |
| Information content (bits; total / per base) | 16.271 / 1.356 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM |
| Aligned words | 9093 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.859 | 0.868 | 0.845 | 0.862 | 0.775 | 0.805 | 319.797 | 350.31 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 3 experiments | median | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 |
| best | 1.0 | 0.999 | 1.0 | 0.999 | 1.0 | 0.999 | |
| Lysate, 1 experiments | median | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 |
| best | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | |
| IVT, 1 experiments | median | 0.999 | 0.997 | 0.986 | 0.984 | 0.809 | 0.836 |
| best | 0.999 | 0.997 | 0.986 | 0.984 | 0.809 | 0.836 | |
| GFPIVT, 1 experiments | median | 1.0 | 0.999 | 1.0 | 0.999 | 1.0 | 0.999 |
| best | 1.0 | 0.999 | 1.0 | 0.999 | 1.0 | 0.999 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 2 experiments | median | 1019.16 | 0.992 | 0.988 | 0.962 |
| best | 1093.886 | 0.995 | 0.989 | 0.966 | |
| Lysate, 1 experiments | median | 1011.859 | 0.992 | 0.989 | 0.964 |
| best | 1026.398 | 0.995 | 0.989 | 0.966 | |
| GFPIVT, 1 experiments | median | 1091.293 | 0.993 | 0.987 | 0.958 |
| best | 1093.886 | 0.995 | 0.988 | 0.962 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.991 | 0.985 | 0.917 | 0.913 | 0.745 | 0.769 |
| best | 0.991 | 0.985 | 0.917 | 0.913 | 0.745 | 0.769 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.809 | 0.341 | 0.966 | 0.621 |
| best | 0.904 | 0.462 | 0.973 | 0.673 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | bHLH-ZIP {1.2.6} (TFClass) |
| TF subfamily | USF {1.2.6.2} (TFClass) |
| TFClass ID | TFClass: 1.2.6.2.3 |
| HGNC | HGNC:30494 |
| MGI | |
| EntrezGene (human) | GeneID:205717 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | USF3_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q68DE3 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 3 overall: 1 Lysate, 1 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 4 |
| PCM | USF3.H13RSNP.0.PSGIB.D.pcm |
| PWM | USF3.H13RSNP.0.PSGIB.D.pwm |
| PFM | USF3.H13RSNP.0.PSGIB.D.pfm |
| Threshold to P-value map | USF3.H13RSNP.0.PSGIB.D.thr |
| Motif in other formats | |
| JASPAR format | USF3.H13RSNP.0.PSGIB.D_jaspar_format.txt |
| MEME format | USF3.H13RSNP.0.PSGIB.D_meme_format.meme |
| Transfac format | USF3.H13RSNP.0.PSGIB.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3120.5 | 689.5 | 2912.5 | 2370.5 |
| 02 | 1844.5 | 455.5 | 5756.5 | 1036.5 |
| 03 | 2607.0 | 1624.0 | 4605.0 | 257.0 |
| 04 | 361.0 | 5663.0 | 341.0 | 2728.0 |
| 05 | 0.0 | 9093.0 | 0.0 | 0.0 |
| 06 | 9093.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 9093.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 9093.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 9093.0 |
| 10 | 0.0 | 0.0 | 9093.0 | 0.0 |
| 11 | 59.0 | 0.0 | 8933.0 | 101.0 |
| 12 | 251.25 | 605.25 | 5424.25 | 2812.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.343 | 0.076 | 0.32 | 0.261 |
| 02 | 0.203 | 0.05 | 0.633 | 0.114 |
| 03 | 0.287 | 0.179 | 0.506 | 0.028 |
| 04 | 0.04 | 0.623 | 0.038 | 0.3 |
| 05 | 0.0 | 1.0 | 0.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 1.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 1.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 1.0 |
| 10 | 0.0 | 0.0 | 1.0 | 0.0 |
| 11 | 0.006 | 0.0 | 0.982 | 0.011 |
| 12 | 0.028 | 0.067 | 0.597 | 0.309 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.317 | -1.191 | 0.248 | 0.042 |
| 02 | -0.209 | -1.604 | 0.929 | -0.784 |
| 03 | 0.137 | -0.336 | 0.705 | -2.172 |
| 04 | -1.835 | 0.912 | -1.891 | 0.182 |
| 05 | -6.906 | 1.386 | -6.906 | -6.906 |
| 06 | 1.386 | -6.906 | -6.906 | -6.906 |
| 07 | -6.906 | 1.386 | -6.906 | -6.906 |
| 08 | -6.906 | -6.906 | 1.386 | -6.906 |
| 09 | -6.906 | -6.906 | -6.906 | 1.386 |
| 10 | -6.906 | -6.906 | 1.386 | -6.906 |
| 11 | -3.615 | -6.906 | 1.368 | -3.093 |
| 12 | -2.194 | -1.321 | 0.869 | 0.213 |
| P-value | Threshold |
|---|---|
| 0.001 | -1.601895 |
| 0.0005 | 0.499125 |
| 0.0001 | 4.231265 |