VEZF1.H13RSNP.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	VEZF1.H13RSNP.1.P.B
Gene (human)	VEZF1 (GeneCards)
Gene synonyms (human)	DB1, ZNF161
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	23
Consensus	RRGWGGRRRvRRRRRRRRdRRRR
GC content	65.1%
Information content (bits; total / per base)	15.439 / 0.671
Data sources	ChIP-Seq
Aligned words	1007
Previous names	VEZF1.H12RSNP.1.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (19)	0.776	0.814	0.601	0.658	0.844	0.915	3.896	4.784	23.42	56.409

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.811	2.669	0.1	0.04

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.2
HGNC	HGNC:12949
MGI
EntrezGene (human)	GeneID:7716 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	VEZF1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14119 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	VEZF1.H13RSNP.1.P.B.pcm
PWM	VEZF1.H13RSNP.1.P.B.pwm
PFM	VEZF1.H13RSNP.1.P.B.pfm
Threshold to P-value map	VEZF1.H13RSNP.1.P.B.thr
Motif in other formats
JASPAR format	VEZF1.H13RSNP.1.P.B_jaspar_format.txt
MEME format	VEZF1.H13RSNP.1.P.B_meme_format.meme
Transfac format	VEZF1.H13RSNP.1.P.B_transfac_format.txt
Homer format	VEZF1.H13RSNP.1.P.B_homer_format_0.001.txt VEZF1.H13RSNP.1.P.B_homer_format_0.0005.txt VEZF1.H13RSNP.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	229.0	42.0	671.0	65.0
02	169.0	23.0	775.0	40.0
03	98.0	60.0	842.0	7.0
04	790.0	65.0	30.0	122.0
05	42.0	16.0	908.0	41.0
06	56.0	31.0	872.0	48.0
07	332.0	94.0	536.0	45.0
08	412.0	54.0	500.0	41.0
09	272.0	87.0	598.0	50.0
10	284.0	127.0	496.0	100.0
11	247.0	79.0	578.0	103.0
12	256.0	72.0	615.0	64.0
13	382.0	49.0	521.0	55.0
14	236.0	42.0	653.0	76.0
15	307.0	32.0	610.0	58.0
16	453.0	56.0	457.0	41.0
17	313.0	46.0	585.0	63.0
18	204.0	148.0	608.0	47.0
19	381.0	80.0	450.0	96.0
20	268.0	48.0	673.0	18.0
21	296.0	43.0	643.0	25.0
22	422.0	70.0	467.0	48.0
23	332.0	66.0	559.0	50.0

PFM

	A	C	G	T
01	0.227	0.042	0.666	0.065
02	0.168	0.023	0.77	0.04
03	0.097	0.06	0.836	0.007
04	0.785	0.065	0.03	0.121
05	0.042	0.016	0.902	0.041
06	0.056	0.031	0.866	0.048
07	0.33	0.093	0.532	0.045
08	0.409	0.054	0.497	0.041
09	0.27	0.086	0.594	0.05
10	0.282	0.126	0.493	0.099
11	0.245	0.078	0.574	0.102
12	0.254	0.071	0.611	0.064
13	0.379	0.049	0.517	0.055
14	0.234	0.042	0.648	0.075
15	0.305	0.032	0.606	0.058
16	0.45	0.056	0.454	0.041
17	0.311	0.046	0.581	0.063
18	0.203	0.147	0.604	0.047
19	0.378	0.079	0.447	0.095
20	0.266	0.048	0.668	0.018
21	0.294	0.043	0.639	0.025
22	0.419	0.07	0.464	0.048
23	0.33	0.066	0.555	0.05

PWM

	A	C	G	T
01	-0.094	-1.757	0.976	-1.335
02	-0.395	-2.327	1.12	-1.804
03	-0.933	-1.413	1.203	-3.369
04	1.139	-1.335	-2.078	-0.717
05	-1.757	-2.66	1.278	-1.78
06	-1.48	-2.047	1.237	-1.629
07	0.275	-0.974	0.752	-1.691
08	0.49	-1.515	0.683	-1.78
09	0.077	-1.05	0.861	-1.589
10	0.12	-0.678	0.675	-0.913
11	-0.019	-1.144	0.827	-0.884
12	0.017	-1.235	0.889	-1.35
13	0.415	-1.609	0.724	-1.497
14	-0.064	-1.757	0.949	-1.182
15	0.197	-2.017	0.881	-1.445
16	0.584	-1.48	0.593	-1.78
17	0.216	-1.67	0.839	-1.365
18	-0.209	-0.526	0.878	-1.649
19	0.412	-1.132	0.578	-0.953
20	0.062	-1.629	0.979	-2.553
21	0.161	-1.735	0.934	-2.25
22	0.514	-1.262	0.615	-1.629
23	0.275	-1.32	0.794	-1.589

Standard thresholds

P-value	Threshold
0.001	3.28466
0.0005	4.31986
0.0001	6.51866