MotifZBED4.H13INVITRO.0.SGIB.A
Gene (human)ZBED4
(GeneCards)
Gene synonyms (human)KIAA0637
Gene (mouse)Zbed4
Gene synonyms (mouse)Kiaa0637
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length20
ConsensusvvdhCRGWMCCRvnhvvvvh
GC content56.3%
Information content (bits; total / per base)12.308 / 0.615
Data sourcesHT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words460
Previous names

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Lysate, 2 experiments median 0.996 0.994 0.992 0.988 0.97 0.962
best 0.996 0.994 0.992 0.988 0.973 0.965

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 3 experiments median 101.658 0.817 0.883 0.783
best 290.284 0.851 0.887 0.797
Lysate, 2 experiments median 195.971 0.834 0.885 0.79
best 290.284 0.851 0.887 0.797
GFPIVT, 1 experiments median 21.102 0.799 0.837 0.763
best 21.102 0.799 0.837 0.763

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.901 0.86 0.832 0.789 0.74 0.714
best 0.901 0.86 0.832 0.789 0.74 0.714

PBM benchmarking auROC, QNZS auPR, QNZS auROC, SD auPR, SD
Overall, 6 experiments median 0.642 0.012 0.631 0.01
best 0.896 0.063 0.872 0.065
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyBED zinc finger {2.3.5} (TFClass)
TF subfamily {2.3.5.0} (TFClass)
TFClass IDTFClass: 2.3.5.0.4
HGNCHGNC:20721
MGIMGI:2682302
EntrezGene (human)GeneID:9889
(SSTAR profile)
EntrezGene (mouse)GeneID:223773
(SSTAR profile)
UniProt ID (human)ZBED4_HUMAN
UniProt ID (mouse)ZBED4_MOUSE
UniProt AC (human)O75132
(TFClass)
UniProt AC (mouse)Q80WQ9
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2 overall: 2 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 1
PBM 6
PCM
ACGT
0162.0114.0241.043.0
02113.095.0208.044.0
03263.043.069.085.0
0470.0232.033.0125.0
052.0385.04.069.0
06242.023.0170.025.0
0717.01.0442.00.0
08366.016.025.053.0
09335.092.05.028.0
100.0450.00.010.0
1119.0439.01.01.0
12340.019.073.028.0
13180.045.0205.030.0
14182.099.092.087.0
15154.0145.058.0103.0
1680.0182.0141.057.0
1795.0131.0186.048.0
18226.058.0131.045.0
19161.0154.0107.038.0
2095.0191.075.099.0
PFM
ACGT
010.1350.2480.5240.093
020.2460.2070.4520.096
030.5720.0930.150.185
040.1520.5040.0720.272
050.0040.8370.0090.15
060.5260.050.370.054
070.0370.0020.9610.0
080.7960.0350.0540.115
090.7280.20.0110.061
100.00.9780.00.022
110.0410.9540.0020.002
120.7390.0410.1590.061
130.3910.0980.4460.065
140.3960.2150.20.189
150.3350.3150.1260.224
160.1740.3960.3070.124
170.2070.2850.4040.104
180.4910.1260.2850.098
190.350.3350.2330.083
200.2070.4150.1630.215
PWM
ACGT
01-0.607-0.0090.733-0.962
02-0.017-0.1880.587-0.94
030.82-0.962-0.502-0.298
04-0.4880.695-1.2160.082
05-3.4961.199-3.047-0.502
060.737-1.5580.387-1.48
07-1.839-3.8291.337-4.331
081.149-1.894-1.48-0.759
091.061-0.22-2.881-1.373
10-4.3311.354-4.331-2.313
11-1.7361.33-3.829-3.829
121.075-1.736-0.447-1.373
130.443-0.9180.572-1.307
140.454-0.148-0.22-0.275
150.2890.229-0.672-0.109
16-0.3570.4540.201-0.689
17-0.1880.1290.476-0.856
180.669-0.6720.129-0.918
190.3330.289-0.071-1.081
20-0.1880.502-0.42-0.148
Standard thresholds
P-value Threshold
0.001 4.20606
0.0005 5.17701
0.0001 7.15551