ZBTB24.H13RSNP.0.SG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBTB24.H13RSNP.0.SG.D
Gene (human)	ZBTB24 (GeneCards)
Gene synonyms (human)	KIAA0441, ZNF450
Gene (mouse)	Zbtb24
Gene synonyms (mouse)	Bif1, Bsg1, Znf450
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	MbCTKYMAGGACCTK
GC content	55.81%
Information content (bits; total / per base)	18.342 / 1.223
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	347
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	1.0	1.0	0.919	0.928	0.728	0.768
GFPIVT, 1 experiments	best	1.0	1.0	0.919	0.928	0.728	0.768

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	283.414	0.85	0.871	0.838
GFPIVT, 1 experiments	best	325.347	0.881	0.895	0.866

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.55
HGNC	HGNC:21143
MGI	MGI:3039618
EntrezGene (human)	GeneID:9841 (SSTAR profile)
EntrezGene (mouse)	GeneID:268294 (SSTAR profile)
UniProt ID (human)	ZBT24_HUMAN
UniProt ID (mouse)	ZBT24_MOUSE
UniProt AC (human)	O43167 (TFClass)
UniProt AC (mouse)	Q80X44 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZBTB24.H13RSNP.0.SG.D.pcm
PWM	ZBTB24.H13RSNP.0.SG.D.pwm
PFM	ZBTB24.H13RSNP.0.SG.D.pfm
Threshold to P-value map	ZBTB24.H13RSNP.0.SG.D.thr
Motif in other formats
JASPAR format	ZBTB24.H13RSNP.0.SG.D_jaspar_format.txt
MEME format	ZBTB24.H13RSNP.0.SG.D_meme_format.meme
Transfac format	ZBTB24.H13RSNP.0.SG.D_transfac_format.txt
Homer format	ZBTB24.H13RSNP.0.SG.D_homer_format_0.001.txt ZBTB24.H13RSNP.0.SG.D_homer_format_0.0005.txt ZBTB24.H13RSNP.0.SG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	196.0	109.0	7.0	35.0
02	20.0	121.0	65.0	141.0
03	0.0	344.0	1.0	2.0
04	38.0	16.0	3.0	290.0
05	23.0	14.0	114.0	196.0
06	21.0	269.0	8.0	49.0
07	64.0	260.0	1.0	22.0
08	341.0	1.0	1.0	4.0
09	11.0	4.0	330.0	2.0
10	1.0	12.0	333.0	1.0
11	318.0	10.0	3.0	16.0
12	2.0	334.0	10.0	1.0
13	2.0	337.0	1.0	7.0
14	3.0	58.0	1.0	285.0
15	25.0	17.0	121.0	184.0

PFM

	A	C	G	T
01	0.565	0.314	0.02	0.101
02	0.058	0.349	0.187	0.406
03	0.0	0.991	0.003	0.006
04	0.11	0.046	0.009	0.836
05	0.066	0.04	0.329	0.565
06	0.061	0.775	0.023	0.141
07	0.184	0.749	0.003	0.063
08	0.983	0.003	0.003	0.012
09	0.032	0.012	0.951	0.006
10	0.003	0.035	0.96	0.003
11	0.916	0.029	0.009	0.046
12	0.006	0.963	0.029	0.003
13	0.006	0.971	0.003	0.02
14	0.009	0.167	0.003	0.821
15	0.072	0.049	0.349	0.53

PWM

	A	C	G	T
01	0.806	0.225	-2.344	-0.883
02	-1.413	0.328	-0.283	0.479
03	-4.1	1.365	-3.579	-3.238
04	-0.804	-1.62	-2.984	1.195
05	-1.283	-1.741	0.269	0.806
06	-1.368	1.12	-2.232	-0.559
07	-0.298	1.087	-3.579	-1.324
08	1.356	-3.579	-3.579	-2.782
09	-1.957	-2.782	1.324	-3.238
10	-3.579	-1.88	1.333	-3.579
11	1.287	-2.041	-2.984	-1.62
12	-3.238	1.336	-2.041	-3.579
13	-3.238	1.345	-3.579	-2.344
14	-2.984	-0.394	-3.579	1.178
15	-1.204	-1.564	0.328	0.743

Standard thresholds

P-value	Threshold
0.001	1.51201
0.0005	2.82796
0.0001	5.60701