ZBTB40.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBTB40.H13INVITRO.0.PSG.A
Gene (human)	ZBTB40 (GeneCards)
Gene synonyms (human)	KIAA0478
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	23
Consensus	nhhhMhAMAACTTTATTGRbvvn
GC content	28.3%
Information content (bits; total / per base)	24.625 / 1.071
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	882
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.985	0.989	0.984	0.987	0.77	0.846	303.963	387.102

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	1.0	1.0	1.0	1.0	0.938	0.954
GFPIVT, 1 experiments	best	1.0	1.0	1.0	1.0	0.938	0.954

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 2 experiments	median	1062.685	0.966	0.992	0.993
overall, 2 experiments	best	1125.538	0.983	0.999	0.998
Lysate, 1 experiments	median	1043.268	0.958	0.995	0.996
Lysate, 1 experiments	best	1043.268	0.958	0.995	0.996
GFPIVT, 1 experiments	median	1082.102	0.974	0.989	0.99
GFPIVT, 1 experiments	best	1125.538	0.983	0.999	0.998

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.123
HGNC	HGNC:29045
MGI
EntrezGene (human)	GeneID:9923 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZBT40_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9NUA8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZBTB40.H13INVITRO.0.PSG.A.pcm
PWM	ZBTB40.H13INVITRO.0.PSG.A.pwm
PFM	ZBTB40.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZBTB40.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZBTB40.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZBTB40.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZBTB40.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZBTB40.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZBTB40.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZBTB40.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	263.0	182.0	201.0	236.0
02	181.25	284.25	91.25	325.25
03	314.0	413.0	51.0	104.0
04	705.0	62.0	53.0	62.0
05	553.0	271.0	12.0	46.0
06	360.0	200.0	7.0	315.0
07	804.0	17.0	20.0	41.0
08	623.0	175.0	9.0	75.0
09	877.0	1.0	3.0	1.0
10	864.0	1.0	17.0	0.0
11	0.0	874.0	0.0	8.0
12	0.0	0.0	0.0	882.0
13	0.0	0.0	0.0	882.0
14	0.0	0.0	0.0	882.0
15	882.0	0.0	0.0	0.0
16	0.0	0.0	0.0	882.0
17	1.0	40.0	1.0	840.0
18	119.0	26.0	718.0	19.0
19	492.0	22.0	215.0	153.0
20	69.0	304.0	114.0	395.0
21	447.0	247.0	110.0	78.0
22	220.75	368.75	150.75	141.75
23	241.75	325.75	154.75	159.75

PFM

	A	C	G	T
01	0.298	0.206	0.228	0.268
02	0.205	0.322	0.103	0.369
03	0.356	0.468	0.058	0.118
04	0.799	0.07	0.06	0.07
05	0.627	0.307	0.014	0.052
06	0.408	0.227	0.008	0.357
07	0.912	0.019	0.023	0.046
08	0.706	0.198	0.01	0.085
09	0.994	0.001	0.003	0.001
10	0.98	0.001	0.019	0.0
11	0.0	0.991	0.0	0.009
12	0.0	0.0	0.0	1.0
13	0.0	0.0	0.0	1.0
14	0.0	0.0	0.0	1.0
15	1.0	0.0	0.0	0.0
16	0.0	0.0	0.0	1.0
17	0.001	0.045	0.001	0.952
18	0.135	0.029	0.814	0.022
19	0.558	0.025	0.244	0.173
20	0.078	0.345	0.129	0.448
21	0.507	0.28	0.125	0.088
22	0.25	0.418	0.171	0.161
23	0.274	0.369	0.175	0.181

PWM

	A	C	G	T
01	0.175	-0.19	-0.092	0.067
02	-0.194	0.252	-0.872	0.386
03	0.351	0.624	-1.439	-0.743
04	1.157	-1.249	-1.402	-1.249
05	0.915	0.205	-2.786	-1.539
06	0.487	-0.097	-3.241	0.354
07	1.288	-2.475	-2.326	-1.649
08	1.034	-0.229	-3.034	-1.064
09	1.375	-4.412	-3.857	-4.412
10	1.36	-4.412	-2.475	-4.876
11	-4.876	1.371	-4.876	-3.132
12	-4.876	-4.876	-4.876	1.381
13	-4.876	-4.876	-4.876	1.381
14	-4.876	-4.876	-4.876	1.381
15	1.381	-4.876	-4.876	-4.876
16	-4.876	-4.876	-4.876	1.381
17	-4.412	-1.673	-4.412	1.332
18	-0.61	-2.082	1.175	-2.374
19	0.798	-2.238	-0.025	-0.362
20	-1.145	0.319	-0.653	0.58
21	0.703	0.113	-0.688	-1.025
22	0.001	0.511	-0.377	-0.438
23	0.091	0.388	-0.351	-0.319

Standard thresholds

P-value	Threshold
0.001	-4.78694
0.0005	-2.89774
0.0001	1.11936