ZBTB40.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBTB40.H13INVIVO.0.PSG.A
Gene (human)	ZBTB40 (GeneCards)
Gene synonyms (human)	KIAA0478
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	19
Consensus	hMMhAMAACTTTATTRdhh
GC content	24.63%
Information content (bits; total / per base)	22.747 / 1.197
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	8436
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.991	0.994	0.989	0.992	0.791	0.867	331.087	429.495

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	1.0	1.0	1.0	1.0	0.944	0.957
GFPIVT, 1 experiments	best	1.0	1.0	1.0	1.0	0.944	0.957

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 2 experiments	median	1062.306	0.966	0.993	0.992
overall, 2 experiments	best	1127.585	0.983	0.999	0.997
Lysate, 1 experiments	median	1039.244	0.958	0.995	0.994
Lysate, 1 experiments	best	1039.244	0.958	0.995	0.994
GFPIVT, 1 experiments	median	1085.367	0.974	0.991	0.99
GFPIVT, 1 experiments	best	1127.585	0.983	0.999	0.997

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.123
HGNC	HGNC:29045
MGI
EntrezGene (human)	GeneID:9923 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZBT40_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9NUA8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZBTB40.H13INVIVO.0.PSG.A.pcm
PWM	ZBTB40.H13INVIVO.0.PSG.A.pwm
PFM	ZBTB40.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZBTB40.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZBTB40.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZBTB40.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZBTB40.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZBTB40.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZBTB40.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZBTB40.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3078.25	3199.25	1020.25	1138.25
02	6100.5	889.5	749.5	696.5
03	5134.0	2392.0	427.0	483.0
04	3126.0	3090.0	263.0	1957.0
05	7416.0	457.0	289.0	274.0
06	6230.0	1288.0	201.0	717.0
07	8315.0	37.0	40.0	44.0
08	8337.0	2.0	84.0	13.0
09	0.0	8436.0	0.0	0.0
10	0.0	0.0	0.0	8436.0
11	0.0	0.0	0.0	8436.0
12	0.0	0.0	0.0	8436.0
13	8435.0	0.0	1.0	0.0
14	8.0	3.0	1.0	8424.0
15	64.0	545.0	76.0	7751.0
16	1904.0	450.0	5699.0	383.0
17	4299.0	349.0	2474.0	1314.0
18	1151.5	2879.5	1081.5	3323.5
19	4441.75	2282.75	770.75	940.75

PFM

	A	C	G	T
01	0.365	0.379	0.121	0.135
02	0.723	0.105	0.089	0.083
03	0.609	0.284	0.051	0.057
04	0.371	0.366	0.031	0.232
05	0.879	0.054	0.034	0.032
06	0.739	0.153	0.024	0.085
07	0.986	0.004	0.005	0.005
08	0.988	0.0	0.01	0.002
09	0.0	1.0	0.0	0.0
10	0.0	0.0	0.0	1.0
11	0.0	0.0	0.0	1.0
12	0.0	0.0	0.0	1.0
13	1.0	0.0	0.0	0.0
14	0.001	0.0	0.0	0.999
15	0.008	0.065	0.009	0.919
16	0.226	0.053	0.676	0.045
17	0.51	0.041	0.293	0.156
18	0.136	0.341	0.128	0.394
19	0.527	0.271	0.091	0.112

PWM

	A	C	G	T
01	0.378	0.416	-0.725	-0.616
02	1.061	-0.862	-1.033	-1.106
03	0.889	0.126	-1.593	-1.47
04	0.393	0.382	-2.074	-0.075
05	1.257	-1.525	-1.981	-2.034
06	1.082	-0.492	-2.341	-1.077
07	1.371	-3.985	-3.911	-3.821
08	1.374	-6.206	-3.198	-4.93
09	-6.84	1.385	-6.84	-6.84
10	-6.84	-6.84	-6.84	1.385
11	-6.84	-6.84	-6.84	1.385
12	-6.84	-6.84	-6.84	1.385
13	1.385	-6.84	-6.473	-6.84
14	-5.327	-5.995	-6.473	1.384
15	-3.461	-1.35	-3.295	1.301
16	-0.102	-1.541	0.993	-1.701
17	0.712	-1.794	0.159	-0.472
18	-0.604	0.311	-0.667	0.454
19	0.744	0.079	-1.005	-0.806

Standard thresholds

P-value	Threshold
0.001	-6.16179
0.0005	-3.97494
0.0001	0.64861