ZBTB41.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBTB41.H13INVITRO.0.PSG.A
Gene (human)	ZBTB41 (GeneCards)
Gene synonyms (human)	FRBZ1
Gene (mouse)	Zbtb41
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	22
Consensus	ddGGGGGKnhdYdAGGGGGKdb
GC content	66.32%
Information content (bits; total / per base)	20.613 / 0.937
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	7989
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.671	0.784	0.49	0.624	0.515	0.597	39.655	79.31

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.998	0.997	0.991	0.988	0.906	0.908
GFPIVT, 1 experiments	best	0.998	0.997	0.991	0.988	0.906	0.908

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	330.032	0.755	0.839	0.733
GFPIVT, 1 experiments	best	419.143	0.764	0.843	0.736

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.33
HGNC	HGNC:24819
MGI	MGI:2444487
EntrezGene (human)	GeneID:360023 (SSTAR profile)
EntrezGene (mouse)	GeneID:226470 (SSTAR profile)
UniProt ID (human)	ZBT41_HUMAN
UniProt ID (mouse)	ZBT41_MOUSE
UniProt AC (human)	Q5SVQ8 (TFClass)
UniProt AC (mouse)	Q811F1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZBTB41.H13INVITRO.0.PSG.A.pcm
PWM	ZBTB41.H13INVITRO.0.PSG.A.pwm
PFM	ZBTB41.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZBTB41.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZBTB41.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZBTB41.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZBTB41.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZBTB41.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZBTB41.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZBTB41.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3336.75	763.75	2538.75	1349.75
02	2294.0	407.0	1834.0	3454.0
03	1973.0	69.0	5856.0	91.0
04	35.0	3.0	7893.0	58.0
05	14.0	3.0	7958.0	14.0
06	10.0	32.0	7899.0	48.0
07	50.0	541.0	6854.0	544.0
08	328.0	744.0	3579.0	3338.0
09	2774.0	1990.0	2115.0	1110.0
10	2671.0	3442.0	477.0	1399.0
11	1613.0	995.0	1975.0	3406.0
12	674.0	2400.0	292.0	4623.0
13	2046.0	291.0	3358.0	2294.0
14	6976.0	46.0	772.0	195.0
15	503.0	97.0	7368.0	21.0
16	28.0	4.0	7924.0	33.0
17	18.0	1.0	7832.0	138.0
18	493.0	160.0	7135.0	201.0
19	136.0	895.0	6693.0	265.0
20	256.0	144.0	6045.0	1544.0
21	1486.75	801.75	2619.75	3080.75
22	1114.0	1995.0	1715.0	3165.0

PFM

	A	C	G	T
01	0.418	0.096	0.318	0.169
02	0.287	0.051	0.23	0.432
03	0.247	0.009	0.733	0.011
04	0.004	0.0	0.988	0.007
05	0.002	0.0	0.996	0.002
06	0.001	0.004	0.989	0.006
07	0.006	0.068	0.858	0.068
08	0.041	0.093	0.448	0.418
09	0.347	0.249	0.265	0.139
10	0.334	0.431	0.06	0.175
11	0.202	0.125	0.247	0.426
12	0.084	0.3	0.037	0.579
13	0.256	0.036	0.42	0.287
14	0.873	0.006	0.097	0.024
15	0.063	0.012	0.922	0.003
16	0.004	0.001	0.992	0.004
17	0.002	0.0	0.98	0.017
18	0.062	0.02	0.893	0.025
19	0.017	0.112	0.838	0.033
20	0.032	0.018	0.757	0.193
21	0.186	0.1	0.328	0.386
22	0.139	0.25	0.215	0.396

PWM

	A	C	G	T
01	0.513	-0.959	0.24	-0.391
02	0.138	-1.586	-0.085	0.547
03	-0.012	-3.335	1.075	-3.065
04	-3.983	-5.943	1.373	-3.502
05	-4.813	-5.943	1.382	-4.813
06	-5.095	-4.067	1.374	-3.684
07	-3.645	-1.303	1.232	-1.298
08	-1.801	-0.986	0.583	0.513
09	0.328	-0.004	0.057	-0.587
10	0.29	0.544	-1.428	-0.356
11	-0.213	-0.696	-0.011	0.533
12	-1.084	0.184	-1.916	0.839
13	0.024	-1.92	0.519	0.138
14	1.25	-3.724	-0.949	-2.316
15	-1.376	-3.003	1.305	-4.454
16	-4.191	-5.769	1.377	-4.038
17	-4.593	-6.423	1.366	-2.657
18	-1.396	-2.512	1.272	-2.286
19	-2.672	-0.801	1.209	-2.012
20	-2.047	-2.615	1.107	-0.257
21	-0.295	-0.911	0.271	0.433
22	-0.583	-0.001	-0.152	0.46

Standard thresholds

P-value	Threshold
0.001	-1.10954
0.0005	0.51276
0.0001	3.92611