ZBTB41.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBTB41.H13RSNP.0.PSG.D
Gene (human)	ZBTB41 (GeneCards)
Gene synonyms (human)	FRBZ1
Gene (mouse)	Zbtb41
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	dGGGGSbvhnbnRGGGRSK
GC content	71.42%
Information content (bits; total / per base)	14.42 / 0.759
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.696	0.821	0.525	0.678	0.544	0.644	48.961	97.921

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.995	0.992	0.986	0.981	0.901	0.902
GFPIVT, 1 experiments	best	0.995	0.992	0.986	0.981	0.901	0.902

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	361.799	0.776	0.851	0.77
GFPIVT, 1 experiments	best	458.678	0.786	0.855	0.774

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.33
HGNC	HGNC:24819
MGI	MGI:2444487
EntrezGene (human)	GeneID:360023 (SSTAR profile)
EntrezGene (mouse)	GeneID:226470 (SSTAR profile)
UniProt ID (human)	ZBT41_HUMAN
UniProt ID (mouse)	ZBT41_MOUSE
UniProt AC (human)	Q5SVQ8 (TFClass)
UniProt AC (mouse)	Q811F1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZBTB41.H13RSNP.0.PSG.D.pcm
PWM	ZBTB41.H13RSNP.0.PSG.D.pwm
PFM	ZBTB41.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	ZBTB41.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZBTB41.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZBTB41.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	ZBTB41.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	ZBTB41.H13RSNP.0.PSG.D_homer_format_0.001.txt ZBTB41.H13RSNP.0.PSG.D_homer_format_0.0005.txt ZBTB41.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	123.0	39.0	150.0	188.0
02	125.0	10.0	363.0	2.0
03	1.0	0.0	476.0	23.0
04	6.0	2.0	490.0	2.0
05	8.0	7.0	463.0	22.0
06	13.0	152.0	283.0	52.0
07	47.0	175.0	130.0	148.0
08	99.0	287.0	74.0	40.0
09	127.0	237.0	31.0	105.0
10	93.0	130.0	132.0	145.0
11	60.0	155.0	127.0	158.0
12	109.0	123.0	192.0	76.0
13	362.0	10.0	93.0	35.0
14	74.0	13.0	413.0	0.0
15	8.0	4.0	479.0	9.0
16	9.0	1.0	452.0	38.0
17	85.0	57.0	315.0	43.0
18	28.0	115.0	309.0	48.0
19	61.0	17.0	279.0	143.0

PFM

	A	C	G	T
01	0.246	0.078	0.3	0.376
02	0.25	0.02	0.726	0.004
03	0.002	0.0	0.952	0.046
04	0.012	0.004	0.98	0.004
05	0.016	0.014	0.926	0.044
06	0.026	0.304	0.566	0.104
07	0.094	0.35	0.26	0.296
08	0.198	0.574	0.148	0.08
09	0.254	0.474	0.062	0.21
10	0.186	0.26	0.264	0.29
11	0.12	0.31	0.254	0.316
12	0.218	0.246	0.384	0.152
13	0.724	0.02	0.186	0.07
14	0.148	0.026	0.826	0.0
15	0.016	0.008	0.958	0.018
16	0.018	0.002	0.904	0.076
17	0.17	0.114	0.63	0.086
18	0.056	0.23	0.618	0.096
19	0.122	0.034	0.558	0.286

PWM

	A	C	G	T
01	-0.016	-1.138	0.18	0.404
02	0.0	-2.394	1.058	-3.573
03	-3.903	-4.4	1.328	-1.64
04	-2.819	-3.573	1.357	-3.573
05	-2.584	-2.694	1.3	-1.681
06	-2.163	0.193	0.81	-0.86
07	-0.958	0.333	0.039	0.167
08	-0.23	0.824	-0.516	-1.114
09	0.016	0.634	-1.358	-0.172
10	-0.291	0.039	0.054	0.147
11	-0.721	0.213	0.016	0.232
12	-0.135	-0.016	0.425	-0.49
13	1.055	-2.394	-0.291	-1.242
14	-0.516	-2.163	1.187	-4.4
15	-2.584	-3.126	1.334	-2.484
16	-2.484	-3.903	1.276	-1.163
17	-0.38	-0.771	0.917	-1.044
18	-1.454	-0.082	0.898	-0.938
19	-0.705	-1.92	0.796	0.133

Standard thresholds

P-value	Threshold
0.001	3.38411
0.0005	4.48751
0.0001	6.78351