ZBTB5.H13CORE.0.SGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBTB5.H13CORE.0.SGI.A
Gene (human)	ZBTB5 (GeneCards)
Gene synonyms (human)	KIAA0354
Gene (mouse)	Zbtb5
Gene synonyms (mouse)	Kiaa0354
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	14
Consensus	nvRbGATChASYdn
GC content	50.51%
Information content (bits; total / per base)	11.902 / 0.85
Data sources	HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	403
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.999	0.998	0.99	0.987	0.868	0.879
GFPIVT, 1 experiments	best	0.999	0.998	0.99	0.987	0.868	0.879

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	29.119	0.79	0.799	0.751
GFPIVT, 1 experiments	best	47.167	0.924	0.924	0.862

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.987	0.979	0.977	0.965	0.949	0.931
Overall, 1 experiments	best	0.987	0.979	0.977	0.965	0.949	0.931

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	BTB-POZ {2.3.2.1} (TFClass)
TFClass ID	TFClass: 2.3.2.1.1
HGNC	HGNC:23836
MGI	MGI:1924601
EntrezGene (human)	GeneID:9925 (SSTAR profile)
EntrezGene (mouse)	GeneID:230119 (SSTAR profile)
UniProt ID (human)	ZBTB5_HUMAN
UniProt ID (mouse)	ZBTB5_MOUSE
UniProt AC (human)	O15062 (TFClass)
UniProt AC (mouse)	Q7TQG0 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZBTB5.H13CORE.0.SGI.A.pcm
PWM	ZBTB5.H13CORE.0.SGI.A.pwm
PFM	ZBTB5.H13CORE.0.SGI.A.pfm
Threshold to P-value map	ZBTB5.H13CORE.0.SGI.A.thr
Motif in other formats
JASPAR format	ZBTB5.H13CORE.0.SGI.A_jaspar_format.txt
MEME format	ZBTB5.H13CORE.0.SGI.A_meme_format.meme
Transfac format	ZBTB5.H13CORE.0.SGI.A_transfac_format.txt
Homer format	ZBTB5.H13CORE.0.SGI.A_homer_format_0.001.txt ZBTB5.H13CORE.0.SGI.A_homer_format_0.0005.txt ZBTB5.H13CORE.0.SGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	123.0	117.0	73.0	90.0
02	170.5	92.5	77.5	62.5
03	80.0	12.0	266.0	45.0
04	21.0	60.0	191.0	131.0
05	2.0	0.0	401.0	0.0
06	403.0	0.0	0.0	0.0
07	0.0	0.0	0.0	403.0
08	0.0	403.0	0.0	0.0
09	47.0	184.0	32.0	140.0
10	327.0	24.0	39.0	13.0
11	5.0	186.0	156.0	56.0
12	20.0	54.0	32.0	297.0
13	116.0	40.0	169.0	78.0
14	100.75	87.75	152.75	61.75

PFM

	A	C	G	T
01	0.305	0.29	0.181	0.223
02	0.423	0.23	0.192	0.155
03	0.199	0.03	0.66	0.112
04	0.052	0.149	0.474	0.325
05	0.005	0.0	0.995	0.0
06	1.0	0.0	0.0	0.0
07	0.0	0.0	0.0	1.0
08	0.0	1.0	0.0	0.0
09	0.117	0.457	0.079	0.347
10	0.811	0.06	0.097	0.032
11	0.012	0.462	0.387	0.139
12	0.05	0.134	0.079	0.737
13	0.288	0.099	0.419	0.194
14	0.25	0.218	0.379	0.153

PWM

	A	C	G	T
01	0.197	0.147	-0.317	-0.111
02	0.52	-0.084	-0.258	-0.469
03	-0.227	-2.025	0.962	-0.788
04	-1.514	-0.508	0.633	0.259
05	-3.375	-4.222	1.37	-4.222
06	1.375	-4.222	-4.222	-4.222
07	-4.222	-4.222	-4.222	1.375
08	-4.222	1.375	-4.222	-4.222
09	-0.746	0.596	-1.116	0.325
10	1.167	-1.389	-0.926	-1.953
11	-2.756	0.606	0.432	-0.576
12	-1.559	-0.611	-1.116	1.071
13	0.139	-0.902	0.511	-0.252
14	0.0	-0.136	0.411	-0.48

Standard thresholds

P-value	Threshold
0.001	4.24166
0.0005	5.36691
0.0001	7.44277