ZBTB6.H13INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBTB6.H13INVIVO.0.P.B
Gene (human)	ZBTB6 (GeneCards)
Gene synonyms (human)	ZID, ZNF482
Gene (mouse)	Zbtb6
Gene synonyms (mouse)	Zfp482, Znf482
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	15
Consensus	vRRhSMTRGAGMhnv
GC content	62.01%
Information content (bits; total / per base)	12.149 / 0.81
Data sources	ChIP-Seq
Aligned words	966
Previous names	ZBTB6.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.891	0.912	0.754	0.807	0.902	0.921	3.502	3.729	248.845	323.469

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	4.046	1.369	0.193	0.154

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZBTB6-like {2.3.3.11} (TFClass)
TFClass ID	TFClass: 2.3.3.11.1
HGNC	HGNC:16764
MGI	MGI:2442998
EntrezGene (human)	GeneID:10773 (SSTAR profile)
EntrezGene (mouse)	GeneID:241322 (SSTAR profile)
UniProt ID (human)	ZBTB6_HUMAN
UniProt ID (mouse)	ZBTB6_MOUSE
UniProt AC (human)	Q15916 (TFClass)
UniProt AC (mouse)	Q8K088 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZBTB6.H13INVIVO.0.P.B.pcm
PWM	ZBTB6.H13INVIVO.0.P.B.pwm
PFM	ZBTB6.H13INVIVO.0.P.B.pfm
Threshold to P-value map	ZBTB6.H13INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZBTB6.H13INVIVO.0.P.B_jaspar_format.txt
MEME format	ZBTB6.H13INVIVO.0.P.B_meme_format.meme
Transfac format	ZBTB6.H13INVIVO.0.P.B_transfac_format.txt
Homer format	ZBTB6.H13INVIVO.0.P.B_homer_format_0.001.txt ZBTB6.H13INVIVO.0.P.B_homer_format_0.0005.txt ZBTB6.H13INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	304.0	163.0	404.0	95.0
02	140.0	63.0	671.0	92.0
03	311.0	41.0	573.0	41.0
04	264.0	187.0	64.0	451.0
05	40.0	181.0	618.0	127.0
06	318.0	592.0	42.0	14.0
07	24.0	155.0	25.0	762.0
08	220.0	7.0	616.0	123.0
09	0.0	3.0	961.0	2.0
10	963.0	1.0	1.0	1.0
11	5.0	2.0	958.0	1.0
12	114.0	740.0	82.0	30.0
13	129.0	572.0	84.0	181.0
14	287.0	147.0	334.0	198.0
15	156.0	243.0	455.0	112.0

PFM

	A	C	G	T
01	0.315	0.169	0.418	0.098
02	0.145	0.065	0.695	0.095
03	0.322	0.042	0.593	0.042
04	0.273	0.194	0.066	0.467
05	0.041	0.187	0.64	0.131
06	0.329	0.613	0.043	0.014
07	0.025	0.16	0.026	0.789
08	0.228	0.007	0.638	0.127
09	0.0	0.003	0.995	0.002
10	0.997	0.001	0.001	0.001
11	0.005	0.002	0.992	0.001
12	0.118	0.766	0.085	0.031
13	0.134	0.592	0.087	0.187
14	0.297	0.152	0.346	0.205
15	0.161	0.252	0.471	0.116

PWM

	A	C	G	T
01	0.229	-0.39	0.512	-0.922
02	-0.54	-1.324	1.017	-0.954
03	0.251	-1.739	0.86	-1.739
04	0.088	-0.254	-1.309	0.621
05	-1.763	-0.286	0.935	-0.636
06	0.273	0.892	-1.716	-2.739
07	-2.247	-0.44	-2.209	1.144
08	-0.093	-3.329	0.932	-0.668
09	-4.953	-3.943	1.376	-4.181
10	1.378	-4.494	-4.494	-4.494
11	-3.589	-4.181	1.373	-4.494
12	-0.743	1.115	-1.067	-2.037
13	-0.621	0.858	-1.043	-0.286
14	0.171	-0.492	0.322	-0.197
15	-0.433	0.006	0.63	-0.76

Standard thresholds

P-value	Threshold
0.001	4.15361
0.0005	5.20286
0.0001	7.25161