ZFAT.H13INVIVO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFAT.H13INVIVO.0.PSGI.A
Gene (human)	ZFAT (GeneCards)
Gene synonyms (human)	KIAA1485, ZFAT1, ZNF406
Gene (mouse)	Zfat
Gene synonyms (mouse)	Gm922, Zfat1, Zfp406, Znf406
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	14
Consensus	nRYWGATTCGhbWn
GC content	49.41%
Information content (bits; total / per base)	15.407 / 1.101
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	2176
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (4)	0.852	0.858	0.743	0.759	0.762	0.773	102.675	136.444

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	1.0	1.0	0.998	0.998	0.882	0.898
GFPIVT, 1 experiments	best	1.0	1.0	0.998	0.998	0.882	0.898

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	115.189	0.766	0.802	0.758
GFPIVT, 1 experiments	best	147.553	0.798	0.824	0.785

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.994	0.992	0.945	0.939	0.765	0.792
Overall, 1 experiments	best	0.994	0.992	0.945	0.939	0.765	0.792

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	HINFP-like {2.3.4.21} (TFClass)
TFClass ID	TFClass: 2.3.4.21.2
HGNC	HGNC:19899
MGI	MGI:2681865
EntrezGene (human)	GeneID:57623 (SSTAR profile)
EntrezGene (mouse)	GeneID:380993 (SSTAR profile)
UniProt ID (human)	ZFAT_HUMAN
UniProt ID (mouse)	ZFAT_MOUSE
UniProt AC (human)	Q9P243 (TFClass)
UniProt AC (mouse)	Q7TS63 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZFAT.H13INVIVO.0.PSGI.A.pcm
PWM	ZFAT.H13INVIVO.0.PSGI.A.pwm
PFM	ZFAT.H13INVIVO.0.PSGI.A.pfm
Threshold to P-value map	ZFAT.H13INVIVO.0.PSGI.A.thr
Motif in other formats
JASPAR format	ZFAT.H13INVIVO.0.PSGI.A_jaspar_format.txt
MEME format	ZFAT.H13INVIVO.0.PSGI.A_meme_format.meme
Transfac format	ZFAT.H13INVIVO.0.PSGI.A_transfac_format.txt
Homer format	ZFAT.H13INVIVO.0.PSGI.A_homer_format_0.001.txt ZFAT.H13INVIVO.0.PSGI.A_homer_format_0.0005.txt ZFAT.H13INVIVO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	642.75	532.75	564.75	435.75
02	352.25	200.25	1467.25	156.25
03	108.0	1684.0	59.0	325.0
04	1593.0	136.0	49.0	398.0
05	2.0	50.0	2118.0	6.0
06	2160.0	0.0	1.0	15.0
07	1.0	0.0	0.0	2175.0
08	0.0	0.0	0.0	2176.0
09	0.0	2176.0	0.0	0.0
10	16.0	7.0	2149.0	4.0
11	351.0	772.0	61.0	992.0
12	282.0	1221.0	288.0	385.0
13	1485.0	176.0	215.0	300.0
14	595.0	777.0	347.0	457.0

PFM

	A	C	G	T
01	0.295	0.245	0.26	0.2
02	0.162	0.092	0.674	0.072
03	0.05	0.774	0.027	0.149
04	0.732	0.063	0.023	0.183
05	0.001	0.023	0.973	0.003
06	0.993	0.0	0.0	0.007
07	0.0	0.0	0.0	1.0
08	0.0	0.0	0.0	1.0
09	0.0	1.0	0.0	0.0
10	0.007	0.003	0.988	0.002
11	0.161	0.355	0.028	0.456
12	0.13	0.561	0.132	0.177
13	0.682	0.081	0.099	0.138
14	0.273	0.357	0.159	0.21

PWM

	A	C	G	T
01	0.166	-0.021	0.037	-0.221
02	-0.433	-0.993	0.99	-1.239
03	-1.603	1.128	-2.193	-0.513
04	1.072	-1.376	-2.372	-0.311
05	-4.936	-2.353	1.357	-4.233
06	1.376	-5.649	-5.23	-3.474
07	-5.23	-5.649	-5.649	1.383
08	-5.649	-5.649	-5.649	1.384
09	-5.649	1.384	-5.649	-5.649
10	-3.416	-4.114	1.371	-4.524
11	-0.436	0.349	-2.161	0.599
12	-0.654	0.807	-0.633	-0.344
13	1.002	-1.121	-0.923	-0.592
14	0.089	0.355	-0.448	-0.174

Standard thresholds

P-value	Threshold
0.001	1.57426
0.0005	3.04876
0.0001	6.24946