ZFPM1.H13INVIVO.0.I.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFPM1.H13INVIVO.0.I.D
Gene (human)	ZFPM1 (GeneCards)
Gene synonyms (human)	FOG1, ZFN89A
Gene (mouse)	Zfpm1
Gene synonyms (mouse)	Fog, Fog1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	9
Consensus	nbTTATCWn
GC content	32.76%
Information content (bits; total / per base)	10.706 / 1.19
Data sources	SMiLe-Seq
Aligned words	858
Previous names

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.711	0.655	0.627	0.602	0.569	0.565
Overall, 1 experiments	best	0.711	0.655	0.627	0.602	0.569	0.565

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2HC zinc finger factors {2.7} (TFClass)
TF family	FOG {2.7.2} (TFClass)
TF subfamily	{2.7.2.0} (TFClass)
TFClass ID	TFClass: 2.7.2.0.1
HGNC	HGNC:19762
MGI	MGI:1095400
EntrezGene (human)	GeneID:161882 (SSTAR profile)
EntrezGene (mouse)	GeneID:22761 (SSTAR profile)
UniProt ID (human)	FOG1_HUMAN
UniProt ID (mouse)	FOG1_MOUSE
UniProt AC (human)	Q8IX07 (TFClass)
UniProt AC (mouse)	O35615 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	0 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZFPM1.H13INVIVO.0.I.D.pcm
PWM	ZFPM1.H13INVIVO.0.I.D.pwm
PFM	ZFPM1.H13INVIVO.0.I.D.pfm
Threshold to P-value map	ZFPM1.H13INVIVO.0.I.D.thr
Motif in other formats
JASPAR format	ZFPM1.H13INVIVO.0.I.D_jaspar_format.txt
MEME format	ZFPM1.H13INVIVO.0.I.D_meme_format.meme
Transfac format	ZFPM1.H13INVIVO.0.I.D_transfac_format.txt
Homer format	ZFPM1.H13INVIVO.0.I.D_homer_format_0.001.txt ZFPM1.H13INVIVO.0.I.D_homer_format_0.0005.txt ZFPM1.H13INVIVO.0.I.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	148.5	245.5	206.5	257.5
02	78.0	344.0	270.0	166.0
03	0.0	1.0	0.0	857.0
04	0.0	0.0	0.0	858.0
05	858.0	0.0	0.0	0.0
06	0.0	0.0	0.0	858.0
07	0.0	858.0	0.0	0.0
08	233.5	4.5	164.5	455.5
09	221.5	188.5	247.5	200.5

PFM

	A	C	G	T
01	0.173	0.286	0.241	0.3
02	0.091	0.401	0.315	0.193
03	0.0	0.001	0.0	0.999
04	0.0	0.0	0.0	1.0
05	1.0	0.0	0.0	0.0
06	0.0	0.0	0.0	1.0
07	0.0	1.0	0.0	0.0
08	0.272	0.005	0.192	0.531
09	0.258	0.22	0.288	0.234

PWM

	A	C	G	T
01	-0.364	0.134	-0.038	0.181
02	-0.998	0.469	0.229	-0.254
03	-4.852	-4.387	-4.852	1.379
04	-4.852	-4.852	-4.852	1.38
05	1.38	-4.852	-4.852	-4.852
06	-4.852	-4.852	-4.852	1.38
07	-4.852	1.38	-4.852	-4.852
08	0.084	-3.553	-0.263	0.749
09	0.032	-0.128	0.142	-0.067

Standard thresholds

P-value	Threshold
0.001	2.28668
0.0005	6.614125
0.0001	7.72827