ZFTA.H13INVITRO.0.PSGIB.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFTA.H13INVITRO.0.PSGIB.A
Gene (human)	ZFTA (GeneCards)
Gene synonyms (human)
Gene (mouse)	Zfta
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	WGTGGCCCChv
GC content	72.09%
Information content (bits; total / per base)	15.215 / 1.383
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words	999
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.974	0.975	0.938	0.94	0.897	0.926	281.503	350.367

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.998	0.997	0.949	0.952	0.724	0.776
GFPIVT, 1 experiments	best	0.998	0.997	0.949	0.952	0.724	0.776

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	296.828	0.92	0.951	0.925
overall, 3 experiments	best	648.292	0.95	0.979	0.947
Lysate, 2 experiments	median	248.989	0.812	0.847	0.857
Lysate, 2 experiments	best	373.77	0.878	0.906	0.9
GFPIVT, 1 experiments	median	412.665	0.941	0.966	0.939
GFPIVT, 1 experiments	best	648.292	0.95	0.979	0.947

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.996	0.995	0.99	0.986	0.876	0.885
Overall, 1 experiments	best	0.996	0.995	0.99	0.986	0.876	0.885

PBM benchmarking		auROC, QNZS	auPR, QNZS	auROC, SD	auPR, SD
Overall, 4 experiments	median	0.87	0.485	0.901	0.527
Overall, 4 experiments	best	0.914	0.496	0.97	0.595

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	BED zinc finger {2.3.5} (TFClass)
TF subfamily	{2.3.5.0} (TFClass)
TFClass ID	TFClass: 2.3.5.0.257
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZFTA_HUMAN
UniProt ID (mouse)	ZFTA_MOUSE
UniProt AC (human)	C9JLR9 (TFClass)
UniProt AC (mouse)	Q4VA45 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	4

PCM	ZFTA.H13INVITRO.0.PSGIB.A.pcm
PWM	ZFTA.H13INVITRO.0.PSGIB.A.pwm
PFM	ZFTA.H13INVITRO.0.PSGIB.A.pfm
Threshold to P-value map	ZFTA.H13INVITRO.0.PSGIB.A.thr
Motif in other formats
JASPAR format	ZFTA.H13INVITRO.0.PSGIB.A_jaspar_format.txt
MEME format	ZFTA.H13INVITRO.0.PSGIB.A_meme_format.meme
Transfac format	ZFTA.H13INVITRO.0.PSGIB.A_transfac_format.txt
Homer format	ZFTA.H13INVITRO.0.PSGIB.A_homer_format_0.001.txt ZFTA.H13INVITRO.0.PSGIB.A_homer_format_0.0005.txt ZFTA.H13INVITRO.0.PSGIB.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	137.0	97.0	68.0	697.0
02	1.0	3.0	952.0	43.0
03	8.0	1.0	104.0	886.0
04	1.0	2.0	994.0	2.0
05	1.0	0.0	997.0	1.0
06	1.0	993.0	0.0	5.0
07	0.0	993.0	0.0	6.0
08	0.0	999.0	0.0	0.0
09	2.0	688.0	5.0	304.0
10	154.0	247.0	79.0	519.0
11	222.0	218.0	482.0	77.0

PFM

	A	C	G	T
01	0.137	0.097	0.068	0.698
02	0.001	0.003	0.953	0.043
03	0.008	0.001	0.104	0.887
04	0.001	0.002	0.995	0.002
05	0.001	0.0	0.998	0.001
06	0.001	0.994	0.0	0.005
07	0.0	0.994	0.0	0.006
08	0.0	1.0	0.0	0.0
09	0.002	0.689	0.005	0.304
10	0.154	0.247	0.079	0.52
11	0.222	0.218	0.482	0.077

PWM

	A	C	G	T
01	-0.595	-0.935	-1.283	1.022
02	-4.524	-3.974	1.333	-1.727
03	-3.252	-4.524	-0.866	1.261
04	-4.524	-4.212	1.376	-4.212
05	-4.524	-4.981	1.379	-4.524
06	-4.524	1.375	-4.981	-3.621
07	-4.981	1.375	-4.981	-3.483
08	-4.981	1.381	-4.981	-4.981
09	-4.212	1.009	-3.621	0.195
10	-0.479	-0.011	-1.136	0.728
11	-0.117	-0.135	0.654	-1.161

Standard thresholds

P-value	Threshold
0.001	1.754945
0.0005	3.32356
0.0001	6.09839