ZKSC5.H13CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZKSC5.H13CORE.0.P.C
Gene (human)	ZKSCAN5 (GeneCards)
Gene synonyms (human)	KIAA1015, ZFP95
Gene (mouse)	Zkscan5
Gene synonyms (mouse)	Zfp95
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	13
Consensus	bbMTCWCCTCChb
GC content	59.3%
Information content (bits; total / per base)	14.758 / 1.135
Data sources	ChIP-Seq
Aligned words	1001
Previous names	ZKSC5.H12CORE.0.P.C

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.918	0.93	0.786	0.815	0.959	0.962	4.535	4.564	264.352	292.237

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.42
HGNC	HGNC:12867
MGI	MGI:107533
EntrezGene (human)	GeneID:23660 (SSTAR profile)
EntrezGene (mouse)	GeneID:22757 (SSTAR profile)
UniProt ID (human)	ZKSC5_HUMAN
UniProt ID (mouse)	ZKSC5_MOUSE
UniProt AC (human)	Q9Y2L8 (TFClass)
UniProt AC (mouse)	Q9Z1D8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZKSC5.H13CORE.0.P.C.pcm
PWM	ZKSC5.H13CORE.0.P.C.pwm
PFM	ZKSC5.H13CORE.0.P.C.pfm
Threshold to P-value map	ZKSC5.H13CORE.0.P.C.thr
Motif in other formats
JASPAR format	ZKSC5.H13CORE.0.P.C_jaspar_format.txt
MEME format	ZKSC5.H13CORE.0.P.C_meme_format.meme
Transfac format	ZKSC5.H13CORE.0.P.C_transfac_format.txt
Homer format	ZKSC5.H13CORE.0.P.C_homer_format_0.001.txt ZKSC5.H13CORE.0.P.C_homer_format_0.0005.txt ZKSC5.H13CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	83.0	446.0	115.0	357.0
02	108.0	389.0	111.0	393.0
03	145.0	704.0	57.0	95.0
04	2.0	1.0	1.0	997.0
05	1.0	994.0	0.0	6.0
06	746.0	45.0	70.0	140.0
07	84.0	908.0	0.0	9.0
08	0.0	907.0	1.0	93.0
09	2.0	2.0	3.0	994.0
10	0.0	999.0	0.0	2.0
11	13.0	900.0	4.0	84.0
12	171.0	242.0	119.0	469.0
13	107.0	498.0	201.0	195.0

PFM

	A	C	G	T
01	0.083	0.446	0.115	0.357
02	0.108	0.389	0.111	0.393
03	0.145	0.703	0.057	0.095
04	0.002	0.001	0.001	0.996
05	0.001	0.993	0.0	0.006
06	0.745	0.045	0.07	0.14
07	0.084	0.907	0.0	0.009
08	0.0	0.906	0.001	0.093
09	0.002	0.002	0.003	0.993
10	0.0	0.998	0.0	0.002
11	0.013	0.899	0.004	0.084
12	0.171	0.242	0.119	0.469
13	0.107	0.498	0.201	0.195

PWM

	A	C	G	T
01	-1.09	0.575	-0.769	0.353
02	-0.831	0.439	-0.804	0.449
03	-0.541	1.03	-1.456	-0.957
04	-4.214	-4.526	-4.526	1.377
05	-4.526	1.374	-4.983	-3.485
06	1.088	-1.685	-1.256	-0.575
07	-1.078	1.284	-4.983	-3.157
08	-4.983	1.283	-4.526	-0.978
09	-4.214	-4.214	-3.976	1.374
10	-4.983	1.379	-4.983	-4.214
11	-2.84	1.275	-3.784	-1.078
12	-0.378	-0.033	-0.736	0.625
13	-0.84	0.685	-0.217	-0.248

Standard thresholds

P-value	Threshold
0.001	2.50631
0.0005	3.83261
0.0001	6.62523