ZN382.H13RSNP.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN382.H13RSNP.0.P.B
Gene (human)	ZNF382 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf382
Gene synonyms (mouse)	Zfp382
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	22
Consensus	RYdRKRYCKGTWSTRvTKYCYC
GC content	47.89%
Information content (bits; total / per base)	18.716 / 0.851
Data sources	ChIP-Seq
Aligned words	478
Previous names	ZN382.H12RSNP.0.P.B; ZN382_HUMAN.H11MO.0.C

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (11)	0.974	0.989	0.965	0.986	0.978	0.992	10.705	12.643	613.921	758.161

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.71	2.011	0.194	0.156

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF37A-like {2.3.4.25} (TFClass)
TFClass ID	TFClass: 2.3.4.25.5
HGNC	HGNC:17409
MGI	MGI:3588204
EntrezGene (human)	GeneID:84911 (SSTAR profile)
EntrezGene (mouse)	GeneID:233060 (SSTAR profile)
UniProt ID (human)	ZN382_HUMAN
UniProt ID (mouse)	ZN382_MOUSE
UniProt AC (human)	Q96SR6 (TFClass)
UniProt AC (mouse)	B2RXC5 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN382.H13RSNP.0.P.B.pcm
PWM	ZN382.H13RSNP.0.P.B.pwm
PFM	ZN382.H13RSNP.0.P.B.pfm
Threshold to P-value map	ZN382.H13RSNP.0.P.B.thr
Motif in other formats
JASPAR format	ZN382.H13RSNP.0.P.B_jaspar_format.txt
MEME format	ZN382.H13RSNP.0.P.B_meme_format.meme
Transfac format	ZN382.H13RSNP.0.P.B_transfac_format.txt
Homer format	ZN382.H13RSNP.0.P.B_homer_format_0.001.txt ZN382.H13RSNP.0.P.B_homer_format_0.0005.txt ZN382.H13RSNP.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	92.0	44.0	314.0	28.0
02	34.0	54.0	38.0	352.0
03	215.0	18.0	145.0	100.0
04	78.0	20.0	333.0	47.0
05	34.0	27.0	316.0	101.0
06	189.0	40.0	223.0	26.0
07	33.0	62.0	24.0	359.0
08	13.0	385.0	8.0	72.0
09	41.0	30.0	68.0	339.0
10	26.0	21.0	428.0	3.0
11	3.0	2.0	6.0	467.0
12	320.0	2.0	72.0	84.0
13	33.0	79.0	335.0	31.0
14	10.0	11.0	8.0	449.0
15	179.0	7.0	260.0	32.0
16	283.0	56.0	92.0	47.0
17	10.0	22.0	10.0	436.0
18	57.0	10.0	338.0	73.0
19	17.0	83.0	77.0	301.0
20	27.0	399.0	8.0	44.0
21	59.0	143.0	11.0	265.0
22	14.0	392.0	15.0	57.0

PFM

	A	C	G	T
01	0.192	0.092	0.657	0.059
02	0.071	0.113	0.079	0.736
03	0.45	0.038	0.303	0.209
04	0.163	0.042	0.697	0.098
05	0.071	0.056	0.661	0.211
06	0.395	0.084	0.467	0.054
07	0.069	0.13	0.05	0.751
08	0.027	0.805	0.017	0.151
09	0.086	0.063	0.142	0.709
10	0.054	0.044	0.895	0.006
11	0.006	0.004	0.013	0.977
12	0.669	0.004	0.151	0.176
13	0.069	0.165	0.701	0.065
14	0.021	0.023	0.017	0.939
15	0.374	0.015	0.544	0.067
16	0.592	0.117	0.192	0.098
17	0.021	0.046	0.021	0.912
18	0.119	0.021	0.707	0.153
19	0.036	0.174	0.161	0.63
20	0.056	0.835	0.017	0.092
21	0.123	0.299	0.023	0.554
22	0.029	0.82	0.031	0.119

PWM

	A	C	G	T
01	-0.258	-0.977	0.958	-1.41
02	-1.225	-0.779	-1.119	1.072
03	0.582	-1.824	0.191	-0.176
04	-0.42	-1.726	1.017	-0.914
05	-1.225	-1.445	0.964	-0.166
06	0.454	-1.069	0.618	-1.48
07	-1.254	-0.644	-1.556	1.091
08	-2.119	1.161	-2.54	-0.498
09	-1.046	-1.345	-0.554	1.034
10	-1.48	-1.681	1.267	-3.283
11	-3.283	-3.531	-2.776	1.353
12	0.977	-3.531	-0.498	-0.347
13	-1.254	-0.407	1.023	-1.314
14	-2.35	-2.267	-2.54	1.314
15	0.4	-2.651	0.77	-1.283
16	0.855	-0.744	-0.258	-0.914
17	-2.35	-1.637	-2.35	1.285
18	-0.726	-2.35	1.031	-0.485
19	-1.876	-0.359	-0.433	0.916
20	-1.445	1.197	-2.54	-0.977
21	-0.693	0.177	-2.267	0.789
22	-2.053	1.179	-1.99	-0.726

Standard thresholds

P-value	Threshold
0.001	2.11106
0.0005	3.28366
0.0001	5.77981