ZN770.H13CORE.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN770.H13CORE.1.P.B
Gene (human)	ZNF770 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf770
Gene synonyms (mouse)	Zfp770
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	22
Consensus	GGAGGCYRRRRnvRRRRRvbbv
GC content	67.78%
Information content (bits; total / per base)	16.931 / 0.77
Data sources	ChIP-Seq
Aligned words	980
Previous names	ZN770.H12CORE.1.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.822	0.858	0.679	0.74	0.945	0.95	8.586	9.944	234.397	253.569

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.491	2.369	0.132	0.069

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.26
HGNC	HGNC:26061
MGI	MGI:2445100
EntrezGene (human)	GeneID:54989 (SSTAR profile)
EntrezGene (mouse)	GeneID:228491 (SSTAR profile)
UniProt ID (human)	ZN770_HUMAN
UniProt ID (mouse)	ZN770_MOUSE
UniProt AC (human)	Q6IQ21 (TFClass)
UniProt AC (mouse)	Q8BIQ8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN770.H13CORE.1.P.B.pcm
PWM	ZN770.H13CORE.1.P.B.pwm
PFM	ZN770.H13CORE.1.P.B.pfm
Threshold to P-value map	ZN770.H13CORE.1.P.B.thr
Motif in other formats
JASPAR format	ZN770.H13CORE.1.P.B_jaspar_format.txt
MEME format	ZN770.H13CORE.1.P.B_meme_format.meme
Transfac format	ZN770.H13CORE.1.P.B_transfac_format.txt
Homer format	ZN770.H13CORE.1.P.B_homer_format_0.001.txt ZN770.H13CORE.1.P.B_homer_format_0.0005.txt ZN770.H13CORE.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	141.0	7.0	814.0	18.0
02	14.0	14.0	950.0	2.0
03	955.0	10.0	11.0	4.0
04	11.0	4.0	961.0	4.0
05	22.0	13.0	935.0	10.0
06	18.0	935.0	16.0	11.0
07	62.0	337.0	29.0	552.0
08	126.0	113.0	712.0	29.0
09	516.0	103.0	307.0	54.0
10	156.0	78.0	695.0	51.0
11	186.0	117.0	626.0	51.0
12	155.0	364.0	251.0	210.0
13	296.0	119.0	447.0	118.0
14	159.0	86.0	672.0	63.0
15	146.0	142.0	649.0	43.0
16	562.0	99.0	246.0	73.0
17	121.0	79.0	727.0	53.0
18	175.0	163.0	582.0	60.0
19	459.0	221.0	204.0	96.0
20	117.0	154.0	281.0	428.0
21	126.0	418.0	286.0	150.0
22	263.0	178.0	459.0	80.0

PFM

	A	C	G	T
01	0.144	0.007	0.831	0.018
02	0.014	0.014	0.969	0.002
03	0.974	0.01	0.011	0.004
04	0.011	0.004	0.981	0.004
05	0.022	0.013	0.954	0.01
06	0.018	0.954	0.016	0.011
07	0.063	0.344	0.03	0.563
08	0.129	0.115	0.727	0.03
09	0.527	0.105	0.313	0.055
10	0.159	0.08	0.709	0.052
11	0.19	0.119	0.639	0.052
12	0.158	0.371	0.256	0.214
13	0.302	0.121	0.456	0.12
14	0.162	0.088	0.686	0.064
15	0.149	0.145	0.662	0.044
16	0.573	0.101	0.251	0.074
17	0.123	0.081	0.742	0.054
18	0.179	0.166	0.594	0.061
19	0.468	0.226	0.208	0.098
20	0.119	0.157	0.287	0.437
21	0.129	0.427	0.292	0.153
22	0.268	0.182	0.468	0.082

PWM

	A	C	G	T
01	-0.547	-3.342	1.196	-2.527
02	-2.753	-2.753	1.35	-4.194
03	1.355	-3.047	-2.965	-3.764
04	-2.965	-3.764	1.362	-3.764
05	-2.342	-2.819	1.334	-3.047
06	-2.527	1.334	-2.633	-2.965
07	-1.354	0.317	-2.083	0.808
08	-0.658	-0.766	1.062	-2.083
09	0.741	-0.857	0.224	-1.488
10	-0.447	-1.13	1.038	-1.543
11	-0.273	-0.731	0.934	-1.543
12	-0.454	0.394	0.024	-0.153
13	0.188	-0.715	0.598	-0.723
14	-0.429	-1.034	1.005	-1.338
15	-0.513	-0.54	0.97	-1.708
16	0.826	-0.896	0.004	-1.194
17	-0.698	-1.117	1.083	-1.506
18	-0.334	-0.404	0.861	-1.386
19	0.625	-0.102	-0.182	-0.926
20	-0.731	-0.46	0.136	0.555
21	-0.658	0.531	0.154	-0.486
22	0.07	-0.317	0.625	-1.105

Standard thresholds

P-value	Threshold
0.001	2.37276
0.0005	3.57201
0.0001	6.10076