ZN770.H13RSNP.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN770.H13RSNP.1.P.B
Gene (human)	ZNF770 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf770
Gene synonyms (mouse)	Zfp770
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	23
Consensus	GGAGGCYGRGRbvGGRGRMKbvS
GC content	68.53%
Information content (bits; total / per base)	21.136 / 0.919
Data sources	ChIP-Seq
Aligned words	1000
Previous names	ZN770.H12RSNP.1.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.788	0.835	0.644	0.715	0.921	0.93	9.245	10.947	178.08	206.347

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.142	3.317	0.112	0.063

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.26
HGNC	HGNC:26061
MGI	MGI:2445100
EntrezGene (human)	GeneID:54989 (SSTAR profile)
EntrezGene (mouse)	GeneID:228491 (SSTAR profile)
UniProt ID (human)	ZN770_HUMAN
UniProt ID (mouse)	ZN770_MOUSE
UniProt AC (human)	Q6IQ21 (TFClass)
UniProt AC (mouse)	Q8BIQ8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZN770.H13RSNP.1.P.B.pcm
PWM	ZN770.H13RSNP.1.P.B.pwm
PFM	ZN770.H13RSNP.1.P.B.pfm
Threshold to P-value map	ZN770.H13RSNP.1.P.B.thr
Motif in other formats
JASPAR format	ZN770.H13RSNP.1.P.B_jaspar_format.txt
MEME format	ZN770.H13RSNP.1.P.B_meme_format.meme
Transfac format	ZN770.H13RSNP.1.P.B_transfac_format.txt
Homer format	ZN770.H13RSNP.1.P.B_homer_format_0.001.txt ZN770.H13RSNP.1.P.B_homer_format_0.0005.txt ZN770.H13RSNP.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	92.0	17.0	879.0	12.0
02	24.0	30.0	944.0	2.0
03	929.0	27.0	37.0	7.0
04	33.0	14.0	945.0	8.0
05	34.0	11.0	942.0	13.0
06	29.0	927.0	30.0	14.0
07	73.0	256.0	54.0	617.0
08	86.0	57.0	835.0	22.0
09	712.0	69.0	178.0	41.0
10	76.0	36.0	855.0	33.0
11	114.0	69.0	778.0	39.0
12	126.0	505.0	157.0	212.0
13	405.0	93.0	428.0	74.0
14	91.0	56.0	825.0	28.0
15	83.0	84.0	809.0	24.0
16	717.0	66.0	157.0	60.0
17	71.0	49.0	861.0	19.0
18	177.0	100.0	677.0	46.0
19	613.0	195.0	129.0	63.0
20	69.0	123.0	213.0	595.0
21	74.0	531.0	246.0	149.0
22	290.0	138.0	503.0	69.0
23	111.0	628.0	198.0	63.0

PFM

	A	C	G	T
01	0.092	0.017	0.879	0.012
02	0.024	0.03	0.944	0.002
03	0.929	0.027	0.037	0.007
04	0.033	0.014	0.945	0.008
05	0.034	0.011	0.942	0.013
06	0.029	0.927	0.03	0.014
07	0.073	0.256	0.054	0.617
08	0.086	0.057	0.835	0.022
09	0.712	0.069	0.178	0.041
10	0.076	0.036	0.855	0.033
11	0.114	0.069	0.778	0.039
12	0.126	0.505	0.157	0.212
13	0.405	0.093	0.428	0.074
14	0.091	0.056	0.825	0.028
15	0.083	0.084	0.809	0.024
16	0.717	0.066	0.157	0.06
17	0.071	0.049	0.861	0.019
18	0.177	0.1	0.677	0.046
19	0.613	0.195	0.129	0.063
20	0.069	0.123	0.213	0.595
21	0.074	0.531	0.246	0.149
22	0.29	0.138	0.503	0.069
23	0.111	0.628	0.198	0.063

PWM

	A	C	G	T
01	-0.988	-2.598	1.252	-2.909
02	-2.281	-2.071	1.324	-4.213
03	1.308	-2.171	-1.872	-3.362
04	-1.981	-2.773	1.325	-3.253
05	-1.952	-2.985	1.321	-2.839
06	-2.103	1.305	-2.071	-2.773
07	-1.215	0.024	-1.508	0.899
08	-1.054	-1.455	1.201	-2.362
09	1.042	-1.27	-0.337	-1.774
10	-1.175	-1.898	1.225	-1.981
11	-0.777	-1.27	1.131	-1.821
12	-0.678	0.7	-0.461	-0.164
13	0.48	-0.977	0.535	-1.201
14	-0.999	-1.473	1.189	-2.136
15	-1.089	-1.077	1.17	-2.281
16	1.049	-1.313	-0.461	-1.406
17	-1.242	-1.602	1.232	-2.497
18	-0.342	-0.906	0.992	-1.663
19	0.893	-0.247	-0.655	-1.358
20	-1.27	-0.702	-0.159	0.863
21	-1.201	0.75	-0.016	-0.513
22	0.147	-0.589	0.696	-1.27
23	-0.803	0.917	-0.231	-1.358

Standard thresholds

P-value	Threshold
0.001	0.93691
0.0005	2.20656
0.0001	4.92351