ZNF107.H13INVIVO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF107.H13INVIVO.0.PSGI.A
Gene (human)	ZNF107 (GeneCards)
Gene synonyms (human)	ZFD25, ZNF588
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	18
Consensus	bbvbGCRCYTGCRYYhYv
GC content	61.24%
Information content (bits; total / per base)	14.023 / 0.779
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	994
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (4)	0.899	0.905	0.851	0.855	0.827	0.868	216.041	257.796

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.791	0.789	0.649	0.66	0.584	0.597
GFPIVT, 3 experiments	best	1.0	0.999	0.998	0.997	0.982	0.979

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	9.699	0.562	0.552	0.439
GFPIVT, 2 experiments	best	401.854	0.924	0.907	0.866

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.527	0.514	0.532	0.516	0.51	0.509
Overall, 1 experiments	best	0.527	0.514	0.532	0.516	0.51	0.509

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.233
HGNC	HGNC:12887
MGI
EntrezGene (human)	GeneID:51427 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN107_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9UII5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZNF107.H13INVIVO.0.PSGI.A.pcm
PWM	ZNF107.H13INVIVO.0.PSGI.A.pwm
PFM	ZNF107.H13INVIVO.0.PSGI.A.pfm
Threshold to P-value map	ZNF107.H13INVIVO.0.PSGI.A.thr
Motif in other formats
JASPAR format	ZNF107.H13INVIVO.0.PSGI.A_jaspar_format.txt
MEME format	ZNF107.H13INVIVO.0.PSGI.A_meme_format.meme
Transfac format	ZNF107.H13INVIVO.0.PSGI.A_transfac_format.txt
Homer format	ZNF107.H13INVIVO.0.PSGI.A_homer_format_0.001.txt ZNF107.H13INVIVO.0.PSGI.A_homer_format_0.0005.txt ZNF107.H13INVIVO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	106.0	248.0	169.0	471.0
02	99.0	237.0	152.0	506.0
03	172.0	247.0	451.0	124.0
04	115.0	118.0	177.0	584.0
05	68.0	20.0	900.0	6.0
06	59.0	845.0	8.0	82.0
07	330.0	123.0	513.0	28.0
08	74.0	912.0	4.0	4.0
09	127.0	467.0	1.0	399.0
10	6.0	23.0	2.0	963.0
11	8.0	6.0	900.0	80.0
12	19.0	884.0	15.0	76.0
13	506.0	36.0	430.0	22.0
14	52.0	802.0	57.0	83.0
15	64.0	415.0	69.0	446.0
16	174.0	557.0	83.0	180.0
17	120.0	626.0	78.0	170.0
18	487.0	221.0	161.0	125.0

PFM

	A	C	G	T
01	0.107	0.249	0.17	0.474
02	0.1	0.238	0.153	0.509
03	0.173	0.248	0.454	0.125
04	0.116	0.119	0.178	0.588
05	0.068	0.02	0.905	0.006
06	0.059	0.85	0.008	0.082
07	0.332	0.124	0.516	0.028
08	0.074	0.918	0.004	0.004
09	0.128	0.47	0.001	0.401
10	0.006	0.023	0.002	0.969
11	0.008	0.006	0.905	0.08
12	0.019	0.889	0.015	0.076
13	0.509	0.036	0.433	0.022
14	0.052	0.807	0.057	0.084
15	0.064	0.418	0.069	0.449
16	0.175	0.56	0.084	0.181
17	0.121	0.63	0.078	0.171
18	0.49	0.222	0.162	0.126

PWM

	A	C	G	T
01	-0.843	-0.002	-0.382	0.636
02	-0.91	-0.047	-0.487	0.708
03	-0.365	-0.006	0.593	-0.688
04	-0.763	-0.737	-0.337	0.85
05	-1.278	-2.444	1.282	-3.478
06	-1.416	1.219	-3.248	-1.095
07	0.282	-0.696	0.721	-2.13
08	-1.195	1.295	-3.777	-3.777
09	-0.665	0.628	-4.52	0.471
10	-3.478	-2.315	-4.207	1.349
11	-3.248	-3.478	1.282	-1.119
12	-2.491	1.264	-2.705	-1.169
13	0.708	-1.892	0.545	-2.356
14	-1.538	1.167	-1.449	-1.083
15	-1.337	0.51	-1.264	0.582
16	-0.353	0.803	-1.083	-0.32
17	-0.721	0.92	-1.144	-0.376
18	0.669	-0.116	-0.43	-0.68

Standard thresholds

P-value	Threshold
0.001	3.55081
0.0005	4.61136
0.0001	6.82081