| Motif | ZNF107.H13RSNP.0.PSGI.D |
| Gene (human) | ZNF107 (GeneCards) |
| Gene synonyms (human) | ZFD25, ZNF588 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZNF107.H13RSNP.0.PSGI.D |
| Gene (human) | ZNF107 (GeneCards) |
| Gene synonyms (human) | ZFD25, ZNF588 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 21 |
| Consensus | hdMWTTRTGCRCTTKCvYhnh |
| GC content | 49.33% |
| Information content (bits; total / per base) | 19.851 / 0.945 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 4827 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (4) | 0.813 | 0.831 | 0.766 | 0.788 | 0.72 | 0.727 | 150.384 | 160.699 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| GFPIVT, 3 experiments | median | 0.862 | 0.871 | 0.675 | 0.702 | 0.588 | 0.618 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.998 | 0.998 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| GFPIVT, 2 experiments | median | 4.638 | 0.52 | 0.635 | 0.488 |
| best | 542.921 | 0.976 | 0.977 | 0.973 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.581 | 0.554 | 0.577 | 0.548 | 0.536 | 0.531 |
| best | 0.581 | 0.554 | 0.577 | 0.548 | 0.536 | 0.531 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.233 |
| HGNC | HGNC:12887 |
| MGI | |
| EntrezGene (human) | GeneID:51427 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN107_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9UII5 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 3 overall: 0 Lysate, 0 IVT, 3 GFPIVT |
| Genomic HT-SELEX | 2 overall: 0 Lysate, 0 IVT, 2 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 0 |
| PCM | ZNF107.H13RSNP.0.PSGI.D.pcm |
| PWM | ZNF107.H13RSNP.0.PSGI.D.pwm |
| PFM | ZNF107.H13RSNP.0.PSGI.D.pfm |
| Threshold to P-value map | ZNF107.H13RSNP.0.PSGI.D.thr |
| Motif in other formats | |
| JASPAR format | ZNF107.H13RSNP.0.PSGI.D_jaspar_format.txt |
| MEME format | ZNF107.H13RSNP.0.PSGI.D_meme_format.meme |
| Transfac format | ZNF107.H13RSNP.0.PSGI.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1170.25 | 969.25 | 710.25 | 1977.25 |
| 02 | 2678.5 | 322.5 | 1308.5 | 517.5 |
| 03 | 777.0 | 3568.0 | 416.0 | 66.0 |
| 04 | 920.0 | 193.0 | 62.0 | 3652.0 |
| 05 | 38.0 | 132.0 | 12.0 | 4645.0 |
| 06 | 58.0 | 212.0 | 29.0 | 4528.0 |
| 07 | 1070.0 | 169.0 | 3541.0 | 47.0 |
| 08 | 179.0 | 433.0 | 45.0 | 4170.0 |
| 09 | 184.0 | 194.0 | 4408.0 | 41.0 |
| 10 | 73.0 | 4531.0 | 22.0 | 201.0 |
| 11 | 3129.0 | 226.0 | 1402.0 | 70.0 |
| 12 | 22.0 | 4796.0 | 3.0 | 6.0 |
| 13 | 217.0 | 552.0 | 11.0 | 4047.0 |
| 14 | 38.0 | 240.0 | 9.0 | 4540.0 |
| 15 | 178.0 | 210.0 | 3320.0 | 1119.0 |
| 16 | 282.0 | 4217.0 | 203.0 | 125.0 |
| 17 | 1749.0 | 534.0 | 2230.0 | 314.0 |
| 18 | 590.0 | 3077.0 | 255.0 | 905.0 |
| 19 | 591.0 | 2222.0 | 511.0 | 1503.0 |
| 20 | 1594.25 | 1380.25 | 600.25 | 1252.25 |
| 21 | 1035.25 | 2007.25 | 719.25 | 1065.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.242 | 0.201 | 0.147 | 0.41 |
| 02 | 0.555 | 0.067 | 0.271 | 0.107 |
| 03 | 0.161 | 0.739 | 0.086 | 0.014 |
| 04 | 0.191 | 0.04 | 0.013 | 0.757 |
| 05 | 0.008 | 0.027 | 0.002 | 0.962 |
| 06 | 0.012 | 0.044 | 0.006 | 0.938 |
| 07 | 0.222 | 0.035 | 0.734 | 0.01 |
| 08 | 0.037 | 0.09 | 0.009 | 0.864 |
| 09 | 0.038 | 0.04 | 0.913 | 0.008 |
| 10 | 0.015 | 0.939 | 0.005 | 0.042 |
| 11 | 0.648 | 0.047 | 0.29 | 0.015 |
| 12 | 0.005 | 0.994 | 0.001 | 0.001 |
| 13 | 0.045 | 0.114 | 0.002 | 0.838 |
| 14 | 0.008 | 0.05 | 0.002 | 0.941 |
| 15 | 0.037 | 0.044 | 0.688 | 0.232 |
| 16 | 0.058 | 0.874 | 0.042 | 0.026 |
| 17 | 0.362 | 0.111 | 0.462 | 0.065 |
| 18 | 0.122 | 0.637 | 0.053 | 0.187 |
| 19 | 0.122 | 0.46 | 0.106 | 0.311 |
| 20 | 0.33 | 0.286 | 0.124 | 0.259 |
| 21 | 0.214 | 0.416 | 0.149 | 0.221 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.031 | -0.219 | -0.529 | 0.493 |
| 02 | 0.796 | -1.315 | 0.081 | -0.844 |
| 03 | -0.439 | 1.083 | -1.062 | -2.876 |
| 04 | -0.271 | -1.824 | -2.937 | 1.106 |
| 05 | -3.406 | -2.199 | -4.45 | 1.347 |
| 06 | -3.001 | -1.731 | -3.66 | 1.321 |
| 07 | -0.12 | -1.955 | 1.075 | -3.203 |
| 08 | -1.898 | -1.022 | -3.245 | 1.239 |
| 09 | -1.871 | -1.819 | 1.294 | -3.333 |
| 10 | -2.778 | 1.322 | -3.914 | -1.784 |
| 11 | 0.952 | -1.668 | 0.15 | -2.819 |
| 12 | -3.914 | 1.379 | -5.464 | -5.003 |
| 13 | -1.708 | -0.78 | -4.523 | 1.209 |
| 14 | -3.406 | -1.608 | -4.689 | 1.324 |
| 15 | -1.904 | -1.74 | 1.011 | -0.075 |
| 16 | -1.448 | 1.25 | -1.774 | -2.252 |
| 17 | 0.371 | -0.813 | 0.613 | -1.341 |
| 18 | -0.714 | 0.935 | -1.548 | -0.287 |
| 19 | -0.712 | 0.61 | -0.857 | 0.219 |
| 20 | 0.278 | 0.134 | -0.697 | 0.037 |
| 21 | -0.153 | 0.508 | -0.516 | -0.124 |
| P-value | Threshold |
|---|---|
| 0.001 | 0.51831 |
| 0.0005 | 1.91791 |
| 0.0001 | 4.87176 |