| Motif | ZNF131.H13RSNP.0.PSGI.D |
| Gene (human) | ZNF131 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf131 |
| Gene synonyms (mouse) | Zfp131 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZNF131.H13RSNP.0.PSGI.D |
| Gene (human) | ZNF131 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf131 |
| Gene synonyms (mouse) | Zfp131 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 14 |
| Consensus | GKCGCRYGCGACRn |
| GC content | 70.98% |
| Information content (bits; total / per base) | 19.527 / 1.395 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 9133 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.795 | 0.799 | 0.614 | 0.619 | 0.488 | 0.491 | 4.134 | 4.569 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 4 experiments | median | 1.0 | 1.0 | 0.996 | 0.996 | 0.893 | 0.912 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Lysate, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| IVT, 1 experiments | median | 0.617 | 0.61 | 0.567 | 0.564 | 0.541 | 0.541 |
| best | 0.617 | 0.61 | 0.567 | 0.564 | 0.541 | 0.541 | |
| GFPIVT, 2 experiments | median | 1.0 | 1.0 | 0.996 | 0.996 | 0.893 | 0.912 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.989 | 0.989 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 3 experiments | median | 302.432 | 0.818 | 0.898 | 0.875 |
| best | 480.77 | 0.957 | 0.974 | 0.966 | |
| Lysate, 1 experiments | median | 304.301 | 0.949 | 0.972 | 0.965 |
| best | 480.77 | 0.957 | 0.974 | 0.966 | |
| GFPIVT, 2 experiments | median | 168.001 | 0.702 | 0.811 | 0.803 |
| best | 330.523 | 0.818 | 0.898 | 0.875 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 3 experiments | median | 0.841 | 0.791 | 0.772 | 0.725 | 0.691 | 0.664 |
| best | 0.891 | 0.854 | 0.827 | 0.784 | 0.749 | 0.717 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.34 |
| HGNC | HGNC:12915 |
| MGI | MGI:1919715 |
| EntrezGene (human) | GeneID:7690 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:72465 (SSTAR profile) |
| UniProt ID (human) | ZN131_HUMAN |
| UniProt ID (mouse) | ZN131_MOUSE |
| UniProt AC (human) | P52739 (TFClass) |
| UniProt AC (mouse) | Q8K3J5 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 4 overall: 1 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 3 overall: 1 Lysate, 0 IVT, 2 GFPIVT |
| SMiLE-Seq | 3 |
| PBM | 0 |
| PCM | ZNF131.H13RSNP.0.PSGI.D.pcm |
| PWM | ZNF131.H13RSNP.0.PSGI.D.pwm |
| PFM | ZNF131.H13RSNP.0.PSGI.D.pfm |
| Threshold to P-value map | ZNF131.H13RSNP.0.PSGI.D.thr |
| Motif in other formats | |
| JASPAR format | ZNF131.H13RSNP.0.PSGI.D_jaspar_format.txt |
| MEME format | ZNF131.H13RSNP.0.PSGI.D_meme_format.meme |
| Transfac format | ZNF131.H13RSNP.0.PSGI.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 275.75 | 515.75 | 7996.75 | 344.75 |
| 02 | 654.5 | 16.5 | 3082.5 | 5379.5 |
| 03 | 20.0 | 9055.0 | 15.0 | 43.0 |
| 04 | 61.0 | 48.0 | 8994.0 | 30.0 |
| 05 | 48.0 | 8962.0 | 67.0 | 56.0 |
| 06 | 4141.0 | 411.0 | 4454.0 | 127.0 |
| 07 | 104.0 | 4129.0 | 185.0 | 4715.0 |
| 08 | 0.0 | 2.0 | 9131.0 | 0.0 |
| 09 | 0.0 | 9133.0 | 0.0 | 0.0 |
| 10 | 0.0 | 0.0 | 9133.0 | 0.0 |
| 11 | 9052.0 | 58.0 | 0.0 | 23.0 |
| 12 | 2.0 | 9131.0 | 0.0 | 0.0 |
| 13 | 5522.5 | 638.5 | 1832.5 | 1139.5 |
| 14 | 3184.75 | 2310.75 | 1454.75 | 2182.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.03 | 0.056 | 0.876 | 0.038 |
| 02 | 0.072 | 0.002 | 0.338 | 0.589 |
| 03 | 0.002 | 0.991 | 0.002 | 0.005 |
| 04 | 0.007 | 0.005 | 0.985 | 0.003 |
| 05 | 0.005 | 0.981 | 0.007 | 0.006 |
| 06 | 0.453 | 0.045 | 0.488 | 0.014 |
| 07 | 0.011 | 0.452 | 0.02 | 0.516 |
| 08 | 0.0 | 0.0 | 1.0 | 0.0 |
| 09 | 0.0 | 1.0 | 0.0 | 0.0 |
| 10 | 0.0 | 0.0 | 1.0 | 0.0 |
| 11 | 0.991 | 0.006 | 0.0 | 0.003 |
| 12 | 0.0 | 1.0 | 0.0 | 0.0 |
| 13 | 0.605 | 0.07 | 0.201 | 0.125 |
| 14 | 0.349 | 0.253 | 0.159 | 0.239 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.107 | -1.484 | 1.253 | -1.885 |
| 02 | -1.247 | -4.802 | 0.3 | 0.856 |
| 03 | -4.631 | 1.377 | -4.885 | -3.921 |
| 04 | -3.587 | -3.817 | 1.37 | -4.26 |
| 05 | -3.817 | 1.367 | -3.496 | -3.669 |
| 06 | 0.595 | -1.71 | 0.668 | -2.872 |
| 07 | -3.068 | 0.592 | -2.502 | 0.725 |
| 08 | -6.91 | -6.28 | 1.385 | -6.91 |
| 09 | -6.91 | 1.386 | -6.91 | -6.91 |
| 10 | -6.91 | -6.91 | 1.386 | -6.91 |
| 11 | 1.377 | -3.635 | -6.91 | -4.504 |
| 12 | -6.28 | 1.385 | -6.91 | -6.91 |
| 13 | 0.883 | -1.272 | -0.22 | -0.694 |
| 14 | 0.332 | 0.012 | -0.45 | -0.045 |
| P-value | Threshold |
|---|---|
| 0.001 | -3.33714 |
| 0.0005 | -1.34049 |
| 0.0001 | 2.83692 |