ZNF14.H13INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF14.H13INVIVO.0.P.C
Gene (human)	ZNF14 (GeneCards)
Gene synonyms (human)	GIOT4, KOX6
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	21
Consensus	WCYRMYMARWARRYYSAGGCA
GC content	49.0%
Information content (bits; total / per base)	18.216 / 0.867
Data sources	ChIP-Seq
Aligned words	121
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.905	0.905	0.894	0.894	0.932	0.932	20.0	20.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF14-like {2.3.3.78} (TFClass)
TFClass ID	TFClass: 2.3.3.78.1
HGNC	HGNC:12924
MGI
EntrezGene (human)	GeneID:7561 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF14_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17017 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF14.H13INVIVO.0.P.C.pcm
PWM	ZNF14.H13INVIVO.0.P.C.pwm
PFM	ZNF14.H13INVIVO.0.P.C.pfm
Threshold to P-value map	ZNF14.H13INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZNF14.H13INVIVO.0.P.C_jaspar_format.txt
MEME format	ZNF14.H13INVIVO.0.P.C_meme_format.meme
Transfac format	ZNF14.H13INVIVO.0.P.C_transfac_format.txt
Homer format	ZNF14.H13INVIVO.0.P.C_homer_format_0.001.txt ZNF14.H13INVIVO.0.P.C_homer_format_0.0005.txt ZNF14.H13INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	19.0	2.0	14.0	86.0
02	3.0	100.0	9.0	9.0
03	10.0	13.0	3.0	95.0
04	24.0	7.0	71.0	19.0
05	86.0	16.0	14.0	5.0
06	15.0	78.0	9.0	19.0
07	16.0	85.0	9.0	11.0
08	101.0	3.0	7.0	10.0
09	26.0	7.0	78.0	10.0
10	25.0	13.0	10.0	73.0
11	111.0	4.0	4.0	2.0
12	58.0	8.0	52.0	3.0
13	92.0	6.0	16.0	7.0
14	12.0	75.0	10.0	24.0
15	13.0	89.0	3.0	16.0
16	4.0	78.0	22.0	17.0
17	108.0	10.0	0.0	3.0
18	16.0	2.0	102.0	1.0
19	20.0	2.0	96.0	3.0
20	8.0	100.0	7.0	6.0
21	108.0	4.0	7.0	2.0

PFM

	A	C	G	T
01	0.157	0.017	0.116	0.711
02	0.025	0.826	0.074	0.074
03	0.083	0.107	0.025	0.785
04	0.198	0.058	0.587	0.157
05	0.711	0.132	0.116	0.041
06	0.124	0.645	0.074	0.157
07	0.132	0.702	0.074	0.091
08	0.835	0.025	0.058	0.083
09	0.215	0.058	0.645	0.083
10	0.207	0.107	0.083	0.603
11	0.917	0.033	0.033	0.017
12	0.479	0.066	0.43	0.025
13	0.76	0.05	0.132	0.058
14	0.099	0.62	0.083	0.198
15	0.107	0.736	0.025	0.132
16	0.033	0.645	0.182	0.14
17	0.893	0.083	0.0	0.025
18	0.132	0.017	0.843	0.008
19	0.165	0.017	0.793	0.025
20	0.066	0.826	0.058	0.05
21	0.893	0.033	0.058	0.017

PWM

	A	C	G	T
01	-0.443	-2.286	-0.727	1.02
02	-2.014	1.169	-1.126	-1.126
03	-1.033	-0.795	-2.014	1.118
04	-0.222	-1.344	0.831	-0.443
05	1.02	-0.604	-0.727	-1.624
06	-0.663	0.924	-1.126	-0.443
07	-0.604	1.008	-1.126	-0.947
08	1.179	-2.014	-1.344	-1.033
09	-0.145	-1.344	0.924	-1.033
10	-0.183	-0.795	-1.033	0.858
11	1.272	-1.8	-1.8	-2.286
12	0.633	-1.229	0.526	-2.014
13	1.086	-1.474	-0.604	-1.344
14	-0.868	0.885	-1.033	-0.222
15	-0.795	1.054	-2.014	-0.604
16	-1.8	0.924	-0.304	-0.547
17	1.245	-1.033	-3.267	-2.014
18	-0.604	-2.286	1.188	-2.66
19	-0.394	-2.286	1.128	-2.014
20	-1.229	1.169	-1.344	-1.474
21	1.245	-1.8	-1.344	-2.286

Standard thresholds

P-value	Threshold
0.001	2.87346
0.0005	3.93641
0.0001	6.21061