ZNF142.H13INVITRO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF142.H13INVITRO.0.PSGI.A
Gene (human)	ZNF142 (GeneCards)
Gene synonyms (human)	KIAA0236
Gene (mouse)	Znf142
Gene synonyms (mouse)	Kiaa0236, Zfp142
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	16
Consensus	RbGCGGTCGGGCRddd
GC content	70.23%
Information content (bits; total / per base)	17.954 / 1.122
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	9537
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (4)	0.877	0.878	0.798	0.804	0.685	0.711	72.986	84.056

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.828	0.818	0.786	0.785	0.715	0.726
GFPIVT, 2 experiments	best	0.999	0.999	0.996	0.995	0.896	0.908

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	72.42	0.818	0.791	0.66
GFPIVT, 1 experiments	best	76.721	0.829	0.792	0.66

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.953	0.935	0.797	0.797	0.654	0.681
Overall, 1 experiments	best	0.953	0.935	0.797	0.797	0.654	0.681

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.37
HGNC	HGNC:12927
MGI	MGI:1924514
EntrezGene (human)	GeneID:7701 (SSTAR profile)
EntrezGene (mouse)	GeneID:77264 (SSTAR profile)
UniProt ID (human)	ZN142_HUMAN
UniProt ID (mouse)	ZN142_MOUSE
UniProt AC (human)	P52746 (TFClass)
UniProt AC (mouse)	G5E869 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZNF142.H13INVITRO.0.PSGI.A.pcm
PWM	ZNF142.H13INVITRO.0.PSGI.A.pwm
PFM	ZNF142.H13INVITRO.0.PSGI.A.pfm
Threshold to P-value map	ZNF142.H13INVITRO.0.PSGI.A.thr
Motif in other formats
JASPAR format	ZNF142.H13INVITRO.0.PSGI.A_jaspar_format.txt
MEME format	ZNF142.H13INVITRO.0.PSGI.A_meme_format.meme
Transfac format	ZNF142.H13INVITRO.0.PSGI.A_transfac_format.txt
Homer format	ZNF142.H13INVITRO.0.PSGI.A_homer_format_0.001.txt ZNF142.H13INVITRO.0.PSGI.A_homer_format_0.0005.txt ZNF142.H13INVITRO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4061.5	191.5	4897.5	386.5
02	573.0	2558.0	2381.0	4025.0
03	45.0	89.0	7262.0	2141.0
04	25.0	8948.0	19.0	545.0
05	24.0	0.0	9508.0	5.0
06	2.0	14.0	9506.0	15.0
07	4.0	0.0	2673.0	6860.0
08	2667.0	6869.0	1.0	0.0
09	3.0	1.0	9533.0	0.0
10	4.0	1.0	9530.0	2.0
11	7.0	14.0	9101.0	415.0
12	411.0	7738.0	44.0	1344.0
13	2694.0	407.0	6077.0	359.0
14	2538.0	979.0	2956.0	3064.0
15	3917.75	783.75	2999.75	1835.75
16	3719.75	744.75	1332.75	3739.75

PFM

	A	C	G	T
01	0.426	0.02	0.514	0.041
02	0.06	0.268	0.25	0.422
03	0.005	0.009	0.761	0.224
04	0.003	0.938	0.002	0.057
05	0.003	0.0	0.997	0.001
06	0.0	0.001	0.997	0.002
07	0.0	0.0	0.28	0.719
08	0.28	0.72	0.0	0.0
09	0.0	0.0	1.0	0.0
10	0.0	0.0	0.999	0.0
11	0.001	0.001	0.954	0.044
12	0.043	0.811	0.005	0.141
13	0.282	0.043	0.637	0.038
14	0.266	0.103	0.31	0.321
15	0.411	0.082	0.315	0.192
16	0.39	0.078	0.14	0.392

PWM

	A	C	G	T
01	0.532	-2.511	0.719	-1.815
02	-1.423	0.07	-0.001	0.523
03	-3.921	-3.264	1.113	-0.108
04	-4.471	1.322	-4.719	-1.473
05	-4.508	-6.949	1.383	-5.791
06	-6.321	-4.987	1.382	-4.927
07	-5.939	-6.949	0.114	1.056
08	0.112	1.058	-6.586	-6.949
09	-6.112	-6.586	1.385	-6.949
10	-5.939	-6.586	1.385	-6.321
11	-5.549	-4.987	1.339	-1.744
12	-1.753	1.177	-3.943	-0.572
13	0.122	-1.763	0.935	-1.888
14	0.062	-0.889	0.215	0.251
15	0.496	-1.111	0.229	-0.261
16	0.444	-1.161	-0.581	0.45

Standard thresholds

P-value	Threshold
0.001	-1.46479
0.0005	0.42641
0.0001	4.30296