ZNF160.H13INVITRO.0.SG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF160.H13INVITRO.0.SG.A
Gene (human)	ZNF160 (GeneCards)
Gene synonyms (human)	KIAA1611
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	dGAAMTRRAAAATdYAhYdRM
GC content	31.77%
Information content (bits; total / per base)	19.754 / 0.941
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	462
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.874	0.853	0.778	0.767	0.702	0.698
GFPIVT, 2 experiments	best	0.958	0.936	0.915	0.885	0.835	0.809

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	225.948	0.731	0.724	0.727
GFPIVT, 1 experiments	best	407.854	0.84	0.84	0.831

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF665-like {2.3.3.76} (TFClass)
TFClass ID	TFClass: 2.3.3.76.2
HGNC	HGNC:12948
MGI
EntrezGene (human)	GeneID:90338 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN160_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9HCG1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF160.H13INVITRO.0.SG.A.pcm
PWM	ZNF160.H13INVITRO.0.SG.A.pwm
PFM	ZNF160.H13INVITRO.0.SG.A.pfm
Threshold to P-value map	ZNF160.H13INVITRO.0.SG.A.thr
Motif in other formats
JASPAR format	ZNF160.H13INVITRO.0.SG.A_jaspar_format.txt
MEME format	ZNF160.H13INVITRO.0.SG.A_meme_format.meme
Transfac format	ZNF160.H13INVITRO.0.SG.A_transfac_format.txt
Homer format	ZNF160.H13INVITRO.0.SG.A_homer_format_0.001.txt ZNF160.H13INVITRO.0.SG.A_homer_format_0.0005.txt ZNF160.H13INVITRO.0.SG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	153.0	23.0	169.0	117.0
02	50.0	3.0	406.0	3.0
03	434.0	9.0	9.0	10.0
04	334.0	2.0	117.0	9.0
05	234.0	157.0	26.0	45.0
06	16.0	7.0	27.0	412.0
07	106.0	18.0	333.0	5.0
08	291.0	76.0	86.0	9.0
09	448.0	7.0	7.0	0.0
10	401.0	4.0	52.0	5.0
11	449.0	3.0	10.0	0.0
12	390.0	21.0	39.0	12.0
13	11.0	76.0	8.0	367.0
14	176.0	10.0	185.0	91.0
15	38.0	354.0	10.0	60.0
16	372.0	42.0	21.0	27.0
17	199.0	133.0	42.0	88.0
18	36.0	60.0	34.0	332.0
19	234.0	17.0	116.0	95.0
20	146.0	16.0	279.0	21.0
21	368.0	39.0	29.0	26.0

PFM

	A	C	G	T
01	0.331	0.05	0.366	0.253
02	0.108	0.006	0.879	0.006
03	0.939	0.019	0.019	0.022
04	0.723	0.004	0.253	0.019
05	0.506	0.34	0.056	0.097
06	0.035	0.015	0.058	0.892
07	0.229	0.039	0.721	0.011
08	0.63	0.165	0.186	0.019
09	0.97	0.015	0.015	0.0
10	0.868	0.009	0.113	0.011
11	0.972	0.006	0.022	0.0
12	0.844	0.045	0.084	0.026
13	0.024	0.165	0.017	0.794
14	0.381	0.022	0.4	0.197
15	0.082	0.766	0.022	0.13
16	0.805	0.091	0.045	0.058
17	0.431	0.288	0.091	0.19
18	0.078	0.13	0.074	0.719
19	0.506	0.037	0.251	0.206
20	0.316	0.035	0.604	0.045
21	0.797	0.084	0.063	0.056

PWM

	A	C	G	T
01	0.278	-1.562	0.376	0.013
02	-0.82	-3.251	1.248	-3.251
03	1.314	-2.408	-2.408	-2.317
04	1.053	-3.5	0.013	-2.408
05	0.699	0.304	-1.447	-0.922
06	-1.898	-2.618	-1.411	1.262
07	-0.085	-1.79	1.05	-2.885
08	0.916	-0.412	-0.29	-2.408
09	1.346	-2.618	-2.618	-4.335
10	1.235	-3.052	-0.782	-2.885
11	1.348	-3.251	-2.317	-4.335
12	1.208	-1.647	-1.06	-2.157
13	-2.234	-0.412	-2.508	1.147
14	0.417	-2.317	0.466	-0.235
15	-1.085	1.111	-2.317	-0.643
16	1.161	-0.989	-1.647	-1.411
17	0.539	0.139	-0.989	-0.268
18	-1.137	-0.643	-1.192	1.047
19	0.699	-1.843	0.004	-0.193
20	0.232	-1.898	0.874	-1.647
21	1.15	-1.06	-1.344	-1.447

Standard thresholds

P-value	Threshold
0.001	1.35436
0.0005	2.62986
0.0001	5.33726