ZNF20.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF20.H13INVIVO.0.PSG.A
Gene (human)	ZNF20 (GeneCards)
Gene synonyms (human)	KOX13
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	25
Consensus	AGTRCWCKCCWvhvWvbvvvvnndR
GC content	55.33%
Information content (bits; total / per base)	15.404 / 0.616
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (4)	0.892	0.969	0.855	0.961	0.9	0.97	126.042	177.638

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.937	0.927	0.736	0.756	0.605	0.646
GFPIVT, 1 experiments	best	0.937	0.927	0.736	0.756	0.605	0.646

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	318.409	0.784	0.811	0.74
GFPIVT, 1 experiments	best	633.824	0.896	0.894	0.833

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.17
HGNC	HGNC:12992
MGI
EntrezGene (human)	GeneID:7568 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF20_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17024 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF20.H13INVIVO.0.PSG.A.pcm
PWM	ZNF20.H13INVIVO.0.PSG.A.pwm
PFM	ZNF20.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF20.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF20.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF20.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF20.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF20.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF20.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF20.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	406.0	20.0	21.0	53.0
02	13.0	47.0	432.0	8.0
03	19.0	6.0	36.0	439.0
04	367.0	14.0	110.0	9.0
05	4.0	420.0	36.0	40.0
06	266.0	42.0	38.0	154.0
07	5.0	406.0	12.0	77.0
08	42.0	44.0	50.0	364.0
09	15.0	428.0	45.0	12.0
10	17.0	452.0	5.0	26.0
11	261.0	40.0	35.0	164.0
12	84.0	277.0	116.0	23.0
13	259.0	111.0	61.0	69.0
14	115.0	86.0	250.0	49.0
15	292.0	21.0	91.0	96.0
16	61.0	61.0	357.0	21.0
17	69.0	149.0	94.0	188.0
18	126.0	55.0	279.0	40.0
19	102.0	101.0	243.0	54.0
20	108.0	69.0	268.0	55.0
21	252.0	66.0	123.0	59.0
22	66.0	107.0	261.0	66.0
23	106.0	187.0	93.0	114.0
24	145.0	49.0	237.0	69.0
25	91.0	58.0	307.0	44.0

PFM

	A	C	G	T
01	0.812	0.04	0.042	0.106
02	0.026	0.094	0.864	0.016
03	0.038	0.012	0.072	0.878
04	0.734	0.028	0.22	0.018
05	0.008	0.84	0.072	0.08
06	0.532	0.084	0.076	0.308
07	0.01	0.812	0.024	0.154
08	0.084	0.088	0.1	0.728
09	0.03	0.856	0.09	0.024
10	0.034	0.904	0.01	0.052
11	0.522	0.08	0.07	0.328
12	0.168	0.554	0.232	0.046
13	0.518	0.222	0.122	0.138
14	0.23	0.172	0.5	0.098
15	0.584	0.042	0.182	0.192
16	0.122	0.122	0.714	0.042
17	0.138	0.298	0.188	0.376
18	0.252	0.11	0.558	0.08
19	0.204	0.202	0.486	0.108
20	0.216	0.138	0.536	0.11
21	0.504	0.132	0.246	0.118
22	0.132	0.214	0.522	0.132
23	0.212	0.374	0.186	0.228
24	0.29	0.098	0.474	0.138
25	0.182	0.116	0.614	0.088

PWM

	A	C	G	T
01	1.17	-1.77	-1.725	-0.841
02	-2.163	-0.958	1.231	-2.584
03	-1.818	-2.819	-1.215	1.247
04	1.069	-2.096	-0.126	-2.484
05	-3.126	1.203	-1.215	-1.114
06	0.749	-1.067	-1.163	0.206
07	-2.961	1.17	-2.234	-0.477
08	-1.067	-1.022	-0.898	1.061
09	-2.034	1.222	-1.0	-2.234
10	-1.92	1.276	-2.961	-1.525
11	0.73	-1.114	-1.242	0.269
12	-0.392	0.789	-0.074	-1.64
13	0.722	-0.117	-0.705	-0.584
14	-0.082	-0.368	0.687	-0.918
15	0.841	-1.725	-0.313	-0.26
16	-0.705	-0.705	1.041	-1.725
17	-0.584	0.174	-0.281	0.404
18	0.008	-0.805	0.796	-1.114
19	-0.201	-0.21	0.659	-0.823
20	-0.144	-0.584	0.756	-0.805
21	0.695	-0.628	-0.016	-0.737
22	-0.628	-0.153	0.73	-0.628
23	-0.163	0.399	-0.291	-0.091
24	0.147	-0.918	0.634	-0.584
25	-0.313	-0.754	0.891	-1.022

Standard thresholds

P-value	Threshold
0.001	3.39421
0.0005	4.40816
0.0001	6.56521