ZNF20.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF20.H13RSNP.0.PSG.D
Gene (human)	ZNF20 (GeneCards)
Gene synonyms (human)	KOX13
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	vAGTACKCKCCWvh
GC content	50.15%
Information content (bits; total / per base)	15.052 / 1.075
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	8635
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (4)	0.876	0.97	0.867	0.96	0.869	0.97	125.916	168.42

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.981	0.979	0.813	0.824	0.662	0.696
GFPIVT, 1 experiments	best	0.981	0.979	0.813	0.824	0.662	0.696

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	360.292	0.84	0.893	0.844
GFPIVT, 1 experiments	best	695.886	0.925	0.938	0.916

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.17
HGNC	HGNC:12992
MGI
EntrezGene (human)	GeneID:7568 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF20_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17024 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF20.H13RSNP.0.PSG.D.pcm
PWM	ZNF20.H13RSNP.0.PSG.D.pwm
PFM	ZNF20.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	ZNF20.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZNF20.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZNF20.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	ZNF20.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	ZNF20.H13RSNP.0.PSG.D_homer_format_0.001.txt ZNF20.H13RSNP.0.PSG.D_homer_format_0.0005.txt ZNF20.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4637.5	1643.5	1494.5	859.5
02	6949.5	694.5	251.5	739.5
03	77.0	23.0	8525.0	10.0
04	10.0	41.0	10.0	8574.0
05	8590.0	22.0	20.0	3.0
06	2.0	8593.0	2.0	38.0
07	1344.0	117.0	1932.0	5242.0
08	89.0	8016.0	77.0	453.0
09	1426.0	277.0	1730.0	5202.0
10	352.0	7683.0	474.0	126.0
11	345.0	7539.0	271.0	480.0
12	1283.0	968.0	755.0	5629.0
13	2882.75	3489.75	1469.75	792.75
14	2223.75	3297.75	1209.75	1903.75

PFM

	A	C	G	T
01	0.537	0.19	0.173	0.1
02	0.805	0.08	0.029	0.086
03	0.009	0.003	0.987	0.001
04	0.001	0.005	0.001	0.993
05	0.995	0.003	0.002	0.0
06	0.0	0.995	0.0	0.004
07	0.156	0.014	0.224	0.607
08	0.01	0.928	0.009	0.052
09	0.165	0.032	0.2	0.602
10	0.041	0.89	0.055	0.015
11	0.04	0.873	0.031	0.056
12	0.149	0.112	0.087	0.652
13	0.334	0.404	0.17	0.092
14	0.258	0.382	0.14	0.22

PWM

	A	C	G	T
01	0.764	-0.272	-0.367	-0.919
02	1.168	-1.132	-2.142	-1.069
03	-3.306	-4.449	1.373	-5.172
04	-5.172	-3.911	-5.172	1.378
05	1.38	-4.489	-4.575	-6.017
06	-6.228	1.381	-6.228	-3.983
07	-0.473	-2.897	-0.111	0.887
08	-3.165	1.311	-3.306	-1.557
09	-0.414	-2.046	-0.221	0.879
10	-1.808	1.269	-1.512	-2.824
11	-1.828	1.25	-2.068	-1.5
12	-0.52	-0.801	-1.049	0.958
13	0.289	0.48	-0.384	-1.0
14	0.03	0.423	-0.578	-0.126

Standard thresholds

P-value	Threshold
0.001	2.37896
0.0005	3.73061
0.0001	6.48406